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D5H7E6 (D5H7E6_SALRM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length1126 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D5H7E6 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 069BAA8DBC21D8B9

FASTA1,126129,538
        10         20         30         40         50         60 
MPDDFLDDPL WYKDAVIYEL HVRSFYDSNN DGYGDFQGLR EKLPYLESLG VNTLWLLPFL 

        70         80         90        100        110        120 
ESPLRDDGYD TADYFKVLPI HGDLDDFRAF LDDAHARGMR VITELVLNHT SDQHPWFQEA 

       130        140        150        160        170        180 
RDPDSDKHDW YVWSDTDERY DDVRVIFTDT EDSNWAWDPK AEKYYWHRFF SHQPDLNFDN 

       190        200        210        220        230        240 
PEVREKMKEV MFFWLDMGVD GLRLDAVPYL FEREGTSSEN LPETIAYVKE LRAAVEERYG 

       250        260        270        280        290        300 
PGKVLLAEAN QWPEDTLPYF GEDAEGESTG VQMAFNFPVM PRLYMALRRE NRRPVVEMLD 

       310        320        330        340        350        360 
LTSGIPDDAQ WALFLRNHDE LTLEMVTDEE RDYMYHEYGA DDRFRINVGI RRRLTPLLGG 

       370        380        390        400        410        420 
ERRRIELMNA LLLSLKGSPI IYYGDEIGMG DDPFLGDRNG VRTPMQWSPD KNGGFSRAPH 

       430        440        450        460        470        480 
HKLFMPPINR GKYSYEFVNV EDAEADPYSL LHFMRRLIAL RQQHKNIFGR GSLELLPVEN 

       490        500        510        520        530        540 
QSILAFLREY EGERILVVNN LSRFTQSVHI PAREDLQGLA PVELSGQSAF PPIEDDDYHL 

       550        560        570        580        590        600 
TVGPHHFYWF KLVPKEDVQR DDTRRSGLQP LEDKNGRTRP VLPVAEGLQN VLVPTMAQRR 

       610        620        630        640        650        660 
GPEQIEALLP EFINEQRWFG GKGEGIEGVE VEDAVRLQSD PVVYLSVLRV DLPEDTSFYT 

       670        680        690        700        710        720 
LPLMAAPEPE ASDILDEHPN ATLAWLEVED TEERRLVYDA TVNPRFWATL FRWWQRGGTG 

       730        740        750        760        770        780 
RSLKGLYTAE PSEAMGDAPP DDVRLLTGEQ SNTSAIVNND YFLKLYRRLE EGPNPEKELL 

       790        800        810        820        830        840 
EHLTDIDFTF SPRLHGTLNF RRRHRQYTLG VLQEALAVDA DAWSYTLSCT TTFLDRVKNS 

       850        860        870        880        890        900 
PFPHEQAKNT GPSADGPHWT ADRFSDATVP VWLEELAPEL ISFARTLGVR TAEMHHALAQ 

       910        920        930        940        950        960 
AGGDEMRPVE APTDAGAELG TRIRTEMEET RALLDRQPDR VSGHVPSDPA WSAARDRLAP 

       970        980        990       1000       1010       1020 
LDDVPGTHDR IRIHGDYHLG QLLRAEGDIY VLDFEGEPTR PLEERRRRKN ALRDVAGMLR 

      1030       1040       1050       1060       1070       1080 
SLEYAVLASW QDHADVDPDY EPWIDALLYW TETTFLDAYA DTTGDAAFLP AAPARYSFLW 

      1090       1100       1110       1120 
AFLLDKALYE VRYELNHRPD WAWLPLHGLH RLLAPRDATA SDPLDA 

« Hide

References

« Hide 'large scale' references
[1]"Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains."
Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J.
ISME J. -:0-0(2010)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: M8.
[2]"Genome sequence of Salinibacter ruber M8."
Genoscope
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: M8.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FP565814 Genomic DNA. Translation: CBH23951.1.
RefSeqYP_003570903.1. NC_014032.1.

3D structure databases

ProteinModelPortalD5H7E6.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBH23951; CBH23951; SRM_01030.
GeneID8995941.
KEGGsrm:SRM_01030.
PATRIC35489876. VBISalRub49863_0943.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000268420.
KOK05343.
PhylomeDBD5H7E6.

Enzyme and pathway databases

BioCycSRUB761659:GHC6-1039-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 3 hits.
InterProIPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
IPR011009. Kinase-like_dom.
IPR012810. TreS/a-amylase_N.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
[Graphical view]
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 2 hits.
SSF56112. SSF56112. 1 hit.
TIGRFAMsTIGR02456. treS_nterm. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5H7E6_SALRM
AccessionPrimary (citable) accession number: D5H7E6
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: November 13, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)