D5H6C9 (D5H6C9_SALRM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Alanine racemase RuleBase RU000608
EC=5.1.1.1 RuleBase RU000608

Gene names

Name:	alr EMBL CBH23584.1
Ordered Locus Names:	SRM_00663 EMBL CBH23584.1

Organism

Salinibacter ruber (strain M8) [Complete proteome] [HAMAP] EMBL CBH23584.1

Taxonomic identifier

761659 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Bacteroidetes Order II. Incertae sedis › Rhodothermaceae › Salinibacter › Salinibacter ruber

Protein attributes

Sequence length	465 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Catalytic activity	L-alanine = D-alanine. RuleBase RU000608 SAAS SAAS020622
Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000608 SAAS SAAS020622
Pathway	Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. SAAS SAAS020622
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000608 SAAS SAAS020622
Molecular function	Isomerase RuleBase RU000608 SAAS SAAS020622 EMBL CBH23584.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	D-alanine biosynthetic process Inferred from electronic annotation. Source: UniProtKB-UniPathway
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5H6C9 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: 3A63DD4326E1328B	FASTA	465	48,585
	10 20 30 40 50 60 MPVDSTGRGP VGCEAGGRGE HVRRAIGAGS FGNHRPGRRL SCACSLIFAR SPVPFAIDRS 70 80 90 100 110 120 PHTVGAAPVT ATVDLAAIQH NAGVLQERAG GADVMAIIKA DAYGHGVRPV ARAAYEAGIR 130 140 150 160 170 180 HYGVARLPEG VHLREAGHGG RILVLGAPAP TQLPRYAEYD LDLTVPSADI AAAVVRHASP 190 200 210 220 230 240 EAPLRVHVTV DTGMGRLGLA PDDVPAVMTR LADAPGVRLA GLWTHFATAD APGSSFAQTQ 250 260 270 280 290 300 LDRFRAVVDA VDVDVEHVHA ANTGGLLTIG APTHEFDASL VRSGIALYGL AATPELSARL 310 320 330 340 350 360 DLRPAMRLAA RVTHLKTVPA GTPISYGAQW EAPRRTRIAT LGIGYGDGYP RRCSGRASVR 370 380 390 400 410 420 IGGASCPIVG TICMDMCMVD LGPPNEAPAT RVDRGDEAVL FGPAGPTAYD VAQWSDTIPY 430 440 450 460 EILCGVSPRV PRRHVNCTDE NGTDENGTDD MRAPSRLTRP TASGG

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Fine-scale evolution: genomic, phenotypic and ecological differentiation in two coexisting Salinibacter ruber strains." Pena A., Teeling H., Huerta-Cepas J., Santos F., Yarza P., Brito-Echeverria J., Lucio M., Schmitt-Kopplin P., Meseguer I., Schenowitz C., Dossat C., Barbe V., Dopazo J., Rossello-Mora R., Schuler M., Glockner F.O., Amann R., Gabaldon T., Anton J. ISME J. -:0-0(2010) Cited for: NUCLEOTIDE SEQUENCE. Strain: M8.
[2]	"Genome sequence of Salinibacter ruber M8." Genoscope Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: M8.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FP565814 Genomic DNA. Translation: CBH23584.1.
RefSeq	YP_003570537.1. NC_014032.1.
3D structure databases
ProteinModelPortal	D5H6C9.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	CBH23584; CBH23584; SRM_00663.
GeneID	8994114.
KEGG	srm:SRM_00663.
PATRIC	35489224. VBISalRub49863_0619.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
PhylomeDB	D5H6C9.
Enzyme and pathway databases
UniPathway	UPA00042; UER00497.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. IPR020622. Ala_racemase_pyridoxalP-BS. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
PROSITE	PS00395. ALANINE_RACEMASE. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5H6C9_SALRM

Accession

Primary (citable) accession number: D5H6C9

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)