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D5H2S7 (D5H2S7_LACCS) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufA EMBL CBL50312.1
Synonyms:tuf HAMAP-Rule MF_00118 EMBL CBL50312.1
Ordered Locus Names:LCRIS_00865 EMBL CBL50312.1
OrganismLactobacillus crispatus (strain ST1) [Complete proteome] [HAMAP] EMBL CBL50312.1
Taxonomic identifier748671 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliLactobacillalesLactobacillaceaeLactobacillus

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding20 – 278GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding82 – 865GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding137 – 1404GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D5H2S7 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 97D73EC2AEE0376D

FASTA39643,604
        10         20         30         40         50         60 
MAEKEHYVRT KPHVNIGTIG HVDHGKTTLT AAITTVLADK GLAKAEDYSQ IDAAPEEKER 

        70         80         90        100        110        120 
GITINTAHVE YETENRHYAH MDAPGHADYI KNMITGAAQM DGAILVVAAT DGPMPQTREH 

       130        140        150        160        170        180 
ILLARQVGVN YIVVFLNKCD LVDDPELIDL VEMEVRDLLT EYDYPGDDIP VVRGSALKAL 

       190        200        210        220        230        240 
QGDKEAQEQI LKLMDVVDEY IPTPERQTDK PFLMPVEDVF TITGRGTVAS GRIDRGTVKV 

       250        260        270        280        290        300 
GDEVEIVGLV DKVLKSVVTG LEMFHKTLDL GEAGDNVGVL LRGIDRDQVV RGQVLAAPGS 

       310        320        330        340        350        360 
IQTHKEFKGQ VYILKKEEGG RHTPFFSDYR PQFYFHTTDI TGEIELPEGT EMVMPGDNTE 

       370        380        390 
FTVKLIKPAA IEKGTKFTIR EGGRTVGAGQ VTEILD 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of Lactobacillus crispatus ST1."
Ojala T., Kuparinen V., Koskinen J.P., Alatalo E., Holm L., Auvinen P., Edelman S., Westerlund-Wikstrom B., Korhonen T.K., Paulin L., Kankainen M.
J. Bacteriol. 192:3547-3548(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ST1.
[2]"Genome Sequence of Lactobacillus crispatus ST1."
Ojala T., Kuparinen V., Koskinen J.P., Alatalo E., Holm L., Auvinen P., Edelman S., Westerlund-Wikstroem B., Korhonen T.K., Paulin L., Kankainen M.
Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: ST1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN692037 Genomic DNA. Translation: CBL50312.1.
RefSeqYP_003601337.1. NC_014106.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBL50312; CBL50312; LCRIS_00865.
GeneID9106266.
KEGGlcr:LCRIS_00865.
PATRIC37240549. VBILacCri149433_0842.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMADNIEMVG.

Enzyme and pathway databases

BioCycLCRI748671:GIX1-928-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5H2S7_LACCS
AccessionPrimary (citable) accession number: D5H2S7
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: June 11, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)