D5GLS4 (D5GLS4_TUBMM) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Whole genome shotgun sequence assembly, scaffold_7, strain Mel28 EMBL CAZ85491.1

Gene names

ORF Names:

GSTUM_00010383001 EMBL CAZ85491.1

Organism

Tuber melanosporum (strain Mel28) (Perigord black truffle) [Reference proteome]

Taxonomic identifier

656061 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Fungi › Dikarya › Ascomycota › saccharomyceta › Pezizomycotina › Pezizomycetes › Pezizales › Tuberaceae › Tuber › Tuber melanosporum

Protein attributes

Sequence length	334 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA ligation involved in DNA repair Inferred from electronic annotation. Source: InterPro DNA recombination Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5GLS4 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: BA87F14D56DB3C2F	FASTA	334	38,513
	10 20 30 40 50 60 MSEKLDGVRA CWDGETFRSR EGNPFYAPAW FTKRMPKDIT LDGELFTTRG GFQDCVSIVR 70 80 90 100 110 120 TQNKPDAWKF SVTYQIFDIP SMGHKPFEER IAYLKDLFGR LRIRWVHVLE HTICKGRRHL 130 140 150 160 170 180 FDTLDKVTAN KGEGLMLREP GSLYINNRSK TLMKVKRFFD ADAIVRGHER GSGKNSNCTG 190 200 210 220 230 240 ALRVEMLDDN GEPTGKFFKI GTGLTDKQRQ NPPKIGIIVI YRFQELSRDG NPRFPAHMVF 250 260 270 280 290 300 VMNKRATRLA NAENAEESNR MSSKSVEADF RILLKWSKRC APAELARFRQ DERGANYHKG 310 320 330 VFLRIQRCYC GEERCGSTLI NNDKLFSPLF IYCL

References

[1]

"Perigord black truffle genome uncovers evolutionary origins and mechanisms of symbiosis." Martin F., Kohler A., Murat C., Balestrini R., Coutinho P.M., Jaillon O., Montanini B., Morin E., Noel B., Percudani R., Porcel B., Rubini A., Amicucci A., Amselem J., Anthouard V., Arcioni S., Artiguenave F., Aury J.M. , Ballario P., Bolchi A., Brenna A., Brun A., Buee M., Cantarel B., Chevalier G., Couloux A., Da Silva C., Denoeud F., Duplessis S., Ghignone S., Hilselberger B., Iotti M., Marcais B., Mello A., Miranda M., Pacioni G., Quesneville H., Riccioni C., Ruotolo R., Splivallo R., Stocchi V., Tisserant E., Viscomi A.R., Zambonelli A., Zampieri E., Henrissat B., Lebrun M.H., Paolocci F., Bonfante P., Ottonello S., Wincker P. Nature 464:1033-1038(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Mel28.

Cross-references

Sequence databases
EMBL GenBank DDBJ	FN430351 Genomic DNA. Translation: CAZ85491.1.
RefSeq	XP_002841300.1. XM_002841254.1.
UniGene	Tme.1238.
3D structure databases
ProteinModelPortal	D5GLS4.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblFungi	CAZ85491; CAZ85491; GSTUM_00010383001.
GeneID	9186475.
KEGG	tml:GSTUM_00010383001.
Phylogenomic databases
KO	K01971.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR016059. DNA_ligase_ATP-dep_CS. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit.
PROSITE	PS00333. DNA_LIGASE_A2. 1 hit. PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5GLS4_TUBMM

Accession

Primary (citable) accession number: D5GLS4

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	March 6, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)