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D5GLS4

- D5GLS4_TUBMM

UniProt

D5GLS4 - D5GLS4_TUBMM

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Protein
Submitted name:

Whole genome shotgun sequence assembly, scaffold_7, strain Mel28

Gene

GSTUM_00010383001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: InterPro
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Whole genome shotgun sequence assembly, scaffold_7, strain Mel28Imported
Gene namesi
ORF Names:GSTUM_00010383001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD5GLS4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiD5GLS4.
KOiK01971.
OMAiGKGQFEN.
OrthoDBiEOG7WHHK6.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GLS4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSEKLDGVRA CWDGETFRSR EGNPFYAPAW FTKRMPKDIT LDGELFTTRG
60 70 80 90 100
GFQDCVSIVR TQNKPDAWKF SVTYQIFDIP SMGHKPFEER IAYLKDLFGR
110 120 130 140 150
LRIRWVHVLE HTICKGRRHL FDTLDKVTAN KGEGLMLREP GSLYINNRSK
160 170 180 190 200
TLMKVKRFFD ADAIVRGHER GSGKNSNCTG ALRVEMLDDN GEPTGKFFKI
210 220 230 240 250
GTGLTDKQRQ NPPKIGIIVI YRFQELSRDG NPRFPAHMVF VMNKRATRLA
260 270 280 290 300
NAENAEESNR MSSKSVEADF RILLKWSKRC APAELARFRQ DERGANYHKG
310 320 330
VFLRIQRCYC GEERCGSTLI NNDKLFSPLF IYCL
Length:334
Mass (Da):38,513
Last modified:June 15, 2010 - v1
Checksum:iBA87F14D56DB3C2F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430351 Genomic DNA. Translation: CAZ85491.1.
RefSeqiXP_002841300.1. XM_002841254.1.
UniGeneiTme.1238.

Genome annotation databases

EnsemblFungiiCAZ85491; CAZ85491; GSTUM_00010383001.
GeneIDi9186475.
KEGGitml:GSTUM_00010383001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430351 Genomic DNA. Translation: CAZ85491.1 .
RefSeqi XP_002841300.1. XM_002841254.1.
UniGenei Tme.1238.

3D structure databases

ProteinModelPortali D5GLS4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii CAZ85491 ; CAZ85491 ; GSTUM_00010383001 .
GeneIDi 9186475.
KEGGi tml:GSTUM_00010383001.

Phylogenomic databases

InParanoidi D5GLS4.
KOi K01971.
OMAi GKGQFEN.
OrthoDBi EOG7WHHK6.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
PROSITEi PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28Imported.

Entry informationi

Entry nameiD5GLS4_TUBMM
AccessioniPrimary (citable) accession number: D5GLS4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 29, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3