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Protein
Submitted name:

Whole genome shotgun sequence assembly, scaffold_7, strain Mel28

Gene

GSTUM_00010383001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Whole genome shotgun sequence assembly, scaffold_7, strain Mel28Imported
Gene namesi
ORF Names:GSTUM_00010383001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD5GLS4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

InParanoidiD5GLS4.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG7WHHK6.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GLS4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEKLDGVRA CWDGETFRSR EGNPFYAPAW FTKRMPKDIT LDGELFTTRG
60 70 80 90 100
GFQDCVSIVR TQNKPDAWKF SVTYQIFDIP SMGHKPFEER IAYLKDLFGR
110 120 130 140 150
LRIRWVHVLE HTICKGRRHL FDTLDKVTAN KGEGLMLREP GSLYINNRSK
160 170 180 190 200
TLMKVKRFFD ADAIVRGHER GSGKNSNCTG ALRVEMLDDN GEPTGKFFKI
210 220 230 240 250
GTGLTDKQRQ NPPKIGIIVI YRFQELSRDG NPRFPAHMVF VMNKRATRLA
260 270 280 290 300
NAENAEESNR MSSKSVEADF RILLKWSKRC APAELARFRQ DERGANYHKG
310 320 330
VFLRIQRCYC GEERCGSTLI NNDKLFSPLF IYCL
Length:334
Mass (Da):38,513
Last modified:June 15, 2010 - v1
Checksum:iBA87F14D56DB3C2F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN430351 Genomic DNA. Translation: CAZ85491.1.
RefSeqiXP_002841300.1. XM_002841254.1.
UniGeneiTme.1238.

Genome annotation databases

EnsemblFungiiCAZ85491; CAZ85491; GSTUM_00010383001.
GeneIDi9186475.
KEGGitml:GSTUM_00010383001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN430351 Genomic DNA. Translation: CAZ85491.1.
RefSeqiXP_002841300.1. XM_002841254.1.
UniGeneiTme.1238.

3D structure databases

ProteinModelPortaliD5GLS4.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCAZ85491; CAZ85491; GSTUM_00010383001.
GeneIDi9186475.
KEGGitml:GSTUM_00010383001.

Phylogenomic databases

InParanoidiD5GLS4.
KOiK10747.
OMAiVRGYWDG.
OrthoDBiEOG7WHHK6.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR029319. DNA_ligase_OB.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
PF14743. DNA_ligase_OB_2. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
PROSITEiPS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28Imported.

Entry informationi

Entry nameiD5GLS4_TUBMM
AccessioniPrimary (citable) accession number: D5GLS4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: March 4, 2015
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.