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Protein

RNA polymerase II transcription factor B subunit 2

Gene

GSTUM_00009642001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Component of the core-TFIIH basal transcription factor involved in nucleotide excision repair (NER) of DNA.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processDNA damage, DNA repairUniRule annotation, Transcription, Transcription regulationUniRule annotation

Names & Taxonomyi

Protein namesi
Recommended name:
RNA polymerase II transcription factor B subunit 2UniRule annotation
Gene namesi
ORF Names:GSTUM_00009642001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
Proteomesi
  • UP000006911 Componenti: Unassembled WGS sequence

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

Interactioni

Protein-protein interaction databases

STRINGi39416.CAZ85067.

Family & Domainsi

Sequence similaritiesi

Belongs to the TFB2 family.UniRule annotation

Phylogenomic databases

InParanoidiD5GKM4.
KOiK03144.
OMAiYLEQYAH.
OrthoDBiEOG092C3703.

Family and domain databases

InterProiView protein in InterPro
IPR004598. TFIIH_p52/Tfb2.
PANTHERiPTHR13152. PTHR13152. 1 hit.
PfamiView protein in Pfam
PF03849. Tfb2. 1 hit.
TIGRFAMsiTIGR00625. tfb2. 1 hit.

Sequencei

Sequence statusi: Complete.

D5GKM4-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSGNIRGFGY LESLPPVTFR RLYQQPATAL AIFRRMLPNL AKTIVTTLLY
60 70 80 90 100
NETPVTLGDL EALVRPESYR EREDAFSKLR RLHIITENNL DVSLDPVFKK
110 120 130 140 150
NFRLAGDHHS FGVPCNAEDK KKITVQFLDD YATRQFEAIL HYMVGTHNEV
160 170 180 190 200
KPSKGVITLL TKGGLMERYG AGSSATITKN GFSFLLQDGN PQIWALLIQY
210 220 230 240 250
LEMSEELGME QTDVLHFLLM LGSLELGQAY SVNTLTETQK LMLADLRDYG
260 270 280 290 300
IVYQRKSSSD RFYPTRLATT LTSESGGLRS ASASMSSAMA KDAEEGKGFI
310 320 330 340 350
ILETNYRVYA YTDSPLQIAV LNLFVKLSTR YPNLVSGRIS RRSIQEAIKM
360 370 380 390 400
GITADQVIDY LSAHAHPQMR KSLVTLPPTV VDQIRLWQIE GERMRTTTGF
410 420 430 440 450
LFKDFHSTQE FEEVAKYAEE LGVLKWKKPA RRCMFVTRHE QIADWLKRRA
460
QQQQPKKVAA
Length:460
Mass (Da):52,241
Last modified:June 15, 2010 - v1
Checksum:iBF8BB4D83EC2D014
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN430340 Genomic DNA. Translation: CAZ85067.1.
RefSeqiXP_002840876.1. XM_002840830.1.
UniGeneiTme.1656.

Genome annotation databases

EnsemblFungiiCAZ85067; CAZ85067; GSTUM_00009642001.
GeneIDi9184729.
KEGGitml:GSTUM_00009642001.

Similar proteinsi

Entry informationi

Entry nameiD5GKM4_TUBMM
AccessioniPrimary (citable) accession number: D5GKM4
Entry historyiIntegrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: July 5, 2017
This is version 34 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported