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D5GH90

- D5GH90_TUBMM

UniProt

D5GH90 - D5GH90_TUBMM

Protein

DNA ligase

Gene

GSTUM_00007799001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:GSTUM_00007799001Imported
    OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
    Taxonomic identifieri656061 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
    ProteomesiUP000006911: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD5GH90.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.
    OMAiFIMEGEV.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5GH90-1 [UniParc]FASTAAdd to Basket

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    MASPSKKRKN FSNTQPTRTL HHFFNKQTAT KKEALDSVLT PDPQLGPVAL    50
    TDEQYAKRLA EEWKQEDKAI RNATPSTHRE SSRAGAKRGR SSSPSTKCAA 100
    SSPHAHSGEE GWKDNLAAAT LRASRAVTPV QKPNTPRILQ EPKRIAASAE 150
    GALEIERAID SMPLGEDPLN PEMARRECHL CAPYSRIRPG KFNKVKDKDK 200
    DTLVNFLRIL IRLDPDSLLP AVWLTTNDIG PSYETNEFGI DGSIISKAIM 250
    KASGITPATL KKLNNKHGDP GDVAFEAKVK QRTLMMKKPT PLTIENVYAT 300
    LVKISRASGK GSQEIKQRHI ERLLVDAKGE EIRYLTRTLI RHLRIGAVKT 350
    TMLIALSRAF SLSAPKGANW NTPEIPGSKE GRQELFTKAE EFLKQCHARR 400
    PNYNDIVPGL LRGGISSLEE NCGTSIHSPL KPMLGSITRD LGEMLLKLKG 450
    CEFTCEYKYD GQRAQIHCDD NGKVSVFSRH LELMTGKYPD LVQLVPNIRG 500
    EGVESFIMEG EVVAMDTETG LVKNFQTLAG RERKNVDVGR ISVDVCLFAF 550
    DLMYLNGQEL LSRPFRERRE LLQSIRGYHP GLLPFIVRPK IFTPPASGPP 600
    EGAQELESKQ IRSRKGKEAA PVKRSSRVKP LLATYEPDKR LESWPKVKKD 650
    YTAATDTLDL VPIAAWYGNG RKAAWWSPIL LALHDPETGS FEAVCKCMSG 700
    FTDKYYIEMK DTLAPDGINT SMTKRAYYEV ADSLTPAIWF EPREVWEVAF 750
    ADITVSPTYT AAGQFMEGRG KGLSLRFPRF VRRREDKGVE EASTPEFLAG 800
    LFFKQERDSE RISKAAVGGE KKTEGMEQDA EVDGQEFFKN MRGEGAGSDV 850
    NL 852
    Length:852
    Mass (Da):94,966
    Last modified:June 15, 2010 - v1
    Checksum:iD2B0280C20029B5D
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN430308 Genomic DNA. Translation: CAZ83915.1.
    RefSeqiXP_002839724.1. XM_002839678.1.

    Genome annotation databases

    EnsemblFungiiCAZ83915; CAZ83915; GSTUM_00007799001.
    GeneIDi9182620.
    KEGGitml:GSTUM_00007799001.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN430308 Genomic DNA. Translation: CAZ83915.1 .
    RefSeqi XP_002839724.1. XM_002839678.1.

    3D structure databases

    ProteinModelPortali D5GH90.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii CAZ83915 ; CAZ83915 ; GSTUM_00007799001 .
    GeneIDi 9182620.
    KEGGi tml:GSTUM_00007799001.

    Phylogenomic databases

    KOi K10747.
    OMAi FIMEGEV.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Mel28Imported.

    Entry informationi

    Entry nameiD5GH90_TUBMM
    AccessioniPrimary (citable) accession number: D5GH90
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3