Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

DNA ligase

Gene

GSTUM_00007799001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:GSTUM_00007799001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
Proteomesi
  • UP000006911 Componenti: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD5GH90.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini538 – 685148DNA_LIGASE_A3InterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD5GH90.
KOiK10747.
OMAiFIMEGEV.
OrthoDBiEOG092C0FHN.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GH90-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MASPSKKRKN FSNTQPTRTL HHFFNKQTAT KKEALDSVLT PDPQLGPVAL
60 70 80 90 100
TDEQYAKRLA EEWKQEDKAI RNATPSTHRE SSRAGAKRGR SSSPSTKCAA
110 120 130 140 150
SSPHAHSGEE GWKDNLAAAT LRASRAVTPV QKPNTPRILQ EPKRIAASAE
160 170 180 190 200
GALEIERAID SMPLGEDPLN PEMARRECHL CAPYSRIRPG KFNKVKDKDK
210 220 230 240 250
DTLVNFLRIL IRLDPDSLLP AVWLTTNDIG PSYETNEFGI DGSIISKAIM
260 270 280 290 300
KASGITPATL KKLNNKHGDP GDVAFEAKVK QRTLMMKKPT PLTIENVYAT
310 320 330 340 350
LVKISRASGK GSQEIKQRHI ERLLVDAKGE EIRYLTRTLI RHLRIGAVKT
360 370 380 390 400
TMLIALSRAF SLSAPKGANW NTPEIPGSKE GRQELFTKAE EFLKQCHARR
410 420 430 440 450
PNYNDIVPGL LRGGISSLEE NCGTSIHSPL KPMLGSITRD LGEMLLKLKG
460 470 480 490 500
CEFTCEYKYD GQRAQIHCDD NGKVSVFSRH LELMTGKYPD LVQLVPNIRG
510 520 530 540 550
EGVESFIMEG EVVAMDTETG LVKNFQTLAG RERKNVDVGR ISVDVCLFAF
560 570 580 590 600
DLMYLNGQEL LSRPFRERRE LLQSIRGYHP GLLPFIVRPK IFTPPASGPP
610 620 630 640 650
EGAQELESKQ IRSRKGKEAA PVKRSSRVKP LLATYEPDKR LESWPKVKKD
660 670 680 690 700
YTAATDTLDL VPIAAWYGNG RKAAWWSPIL LALHDPETGS FEAVCKCMSG
710 720 730 740 750
FTDKYYIEMK DTLAPDGINT SMTKRAYYEV ADSLTPAIWF EPREVWEVAF
760 770 780 790 800
ADITVSPTYT AAGQFMEGRG KGLSLRFPRF VRRREDKGVE EASTPEFLAG
810 820 830 840 850
LFFKQERDSE RISKAAVGGE KKTEGMEQDA EVDGQEFFKN MRGEGAGSDV

NL
Length:852
Mass (Da):94,966
Last modified:June 15, 2010 - v1
Checksum:iD2B0280C20029B5D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN430308 Genomic DNA. Translation: CAZ83915.1.
RefSeqiXP_002839724.1. XM_002839678.1.

Genome annotation databases

EnsemblFungiiCAZ83915; CAZ83915; GSTUM_00007799001.
GeneIDi9182620.
KEGGitml:GSTUM_00007799001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN430308 Genomic DNA. Translation: CAZ83915.1.
RefSeqiXP_002839724.1. XM_002839678.1.

3D structure databases

ProteinModelPortaliD5GH90.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblFungiiCAZ83915; CAZ83915; GSTUM_00007799001.
GeneIDi9182620.
KEGGitml:GSTUM_00007799001.

Phylogenomic databases

InParanoidiD5GH90.
KOiK10747.
OMAiFIMEGEV.
OrthoDBiEOG092C0FHN.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Entry informationi

Entry nameiD5GH90_TUBMM
AccessioniPrimary (citable) accession number: D5GH90
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: September 7, 2016
This is version 32 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.