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D5GH90

- D5GH90_TUBMM

UniProt

D5GH90 - D5GH90_TUBMM

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Protein
DNA ligase
Gene
GSTUM_00007799001
Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC
Complete GO annotation...

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:GSTUM_00007799001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD5GH90.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.
OMAiFIMEGEV.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GH90-1 [UniParc]FASTAAdd to Basket

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MASPSKKRKN FSNTQPTRTL HHFFNKQTAT KKEALDSVLT PDPQLGPVAL    50
TDEQYAKRLA EEWKQEDKAI RNATPSTHRE SSRAGAKRGR SSSPSTKCAA 100
SSPHAHSGEE GWKDNLAAAT LRASRAVTPV QKPNTPRILQ EPKRIAASAE 150
GALEIERAID SMPLGEDPLN PEMARRECHL CAPYSRIRPG KFNKVKDKDK 200
DTLVNFLRIL IRLDPDSLLP AVWLTTNDIG PSYETNEFGI DGSIISKAIM 250
KASGITPATL KKLNNKHGDP GDVAFEAKVK QRTLMMKKPT PLTIENVYAT 300
LVKISRASGK GSQEIKQRHI ERLLVDAKGE EIRYLTRTLI RHLRIGAVKT 350
TMLIALSRAF SLSAPKGANW NTPEIPGSKE GRQELFTKAE EFLKQCHARR 400
PNYNDIVPGL LRGGISSLEE NCGTSIHSPL KPMLGSITRD LGEMLLKLKG 450
CEFTCEYKYD GQRAQIHCDD NGKVSVFSRH LELMTGKYPD LVQLVPNIRG 500
EGVESFIMEG EVVAMDTETG LVKNFQTLAG RERKNVDVGR ISVDVCLFAF 550
DLMYLNGQEL LSRPFRERRE LLQSIRGYHP GLLPFIVRPK IFTPPASGPP 600
EGAQELESKQ IRSRKGKEAA PVKRSSRVKP LLATYEPDKR LESWPKVKKD 650
YTAATDTLDL VPIAAWYGNG RKAAWWSPIL LALHDPETGS FEAVCKCMSG 700
FTDKYYIEMK DTLAPDGINT SMTKRAYYEV ADSLTPAIWF EPREVWEVAF 750
ADITVSPTYT AAGQFMEGRG KGLSLRFPRF VRRREDKGVE EASTPEFLAG 800
LFFKQERDSE RISKAAVGGE KKTEGMEQDA EVDGQEFFKN MRGEGAGSDV 850
NL 852
Length:852
Mass (Da):94,966
Last modified:June 15, 2010 - v1
Checksum:iD2B0280C20029B5D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430308 Genomic DNA. Translation: CAZ83915.1.
RefSeqiXP_002839724.1. XM_002839678.1.

Genome annotation databases

EnsemblFungiiCAZ83915; CAZ83915; GSTUM_00007799001.
GeneIDi9182620.
KEGGitml:GSTUM_00007799001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430308 Genomic DNA. Translation: CAZ83915.1 .
RefSeqi XP_002839724.1. XM_002839678.1.

3D structure databases

ProteinModelPortali D5GH90.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii CAZ83915 ; CAZ83915 ; GSTUM_00007799001 .
GeneIDi 9182620.
KEGGi tml:GSTUM_00007799001.

Phylogenomic databases

KOi K10747.
OMAi FIMEGEV.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28.

Entry informationi

Entry nameiD5GH90_TUBMM
AccessioniPrimary (citable) accession number: D5GH90
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: November 13, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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