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D5GH90 (D5GH90_TUBMM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:GSTUM_00007799001 EMBL CAZ83915.1
OrganismTuber melanosporum (strain Mel28) (Perigord black truffle) [Reference proteome]
Taxonomic identifier656061 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber

Protein attributes

Sequence length852 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

Sequence similarities

Belongs to the ATP-dependent DNA ligase family. RuleBase RU004196

Sequences

Sequence LengthMass (Da)Tools
D5GH90 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: D2B0280C20029B5D

FASTA85294,966
        10         20         30         40         50         60 
MASPSKKRKN FSNTQPTRTL HHFFNKQTAT KKEALDSVLT PDPQLGPVAL TDEQYAKRLA 

        70         80         90        100        110        120 
EEWKQEDKAI RNATPSTHRE SSRAGAKRGR SSSPSTKCAA SSPHAHSGEE GWKDNLAAAT 

       130        140        150        160        170        180 
LRASRAVTPV QKPNTPRILQ EPKRIAASAE GALEIERAID SMPLGEDPLN PEMARRECHL 

       190        200        210        220        230        240 
CAPYSRIRPG KFNKVKDKDK DTLVNFLRIL IRLDPDSLLP AVWLTTNDIG PSYETNEFGI 

       250        260        270        280        290        300 
DGSIISKAIM KASGITPATL KKLNNKHGDP GDVAFEAKVK QRTLMMKKPT PLTIENVYAT 

       310        320        330        340        350        360 
LVKISRASGK GSQEIKQRHI ERLLVDAKGE EIRYLTRTLI RHLRIGAVKT TMLIALSRAF 

       370        380        390        400        410        420 
SLSAPKGANW NTPEIPGSKE GRQELFTKAE EFLKQCHARR PNYNDIVPGL LRGGISSLEE 

       430        440        450        460        470        480 
NCGTSIHSPL KPMLGSITRD LGEMLLKLKG CEFTCEYKYD GQRAQIHCDD NGKVSVFSRH 

       490        500        510        520        530        540 
LELMTGKYPD LVQLVPNIRG EGVESFIMEG EVVAMDTETG LVKNFQTLAG RERKNVDVGR 

       550        560        570        580        590        600 
ISVDVCLFAF DLMYLNGQEL LSRPFRERRE LLQSIRGYHP GLLPFIVRPK IFTPPASGPP 

       610        620        630        640        650        660 
EGAQELESKQ IRSRKGKEAA PVKRSSRVKP LLATYEPDKR LESWPKVKKD YTAATDTLDL 

       670        680        690        700        710        720 
VPIAAWYGNG RKAAWWSPIL LALHDPETGS FEAVCKCMSG FTDKYYIEMK DTLAPDGINT 

       730        740        750        760        770        780 
SMTKRAYYEV ADSLTPAIWF EPREVWEVAF ADITVSPTYT AAGQFMEGRG KGLSLRFPRF 

       790        800        810        820        830        840 
VRRREDKGVE EASTPEFLAG LFFKQERDSE RISKAAVGGE KKTEGMEQDA EVDGQEFFKN 

       850 
MRGEGAGSDV NL 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN430308 Genomic DNA. Translation: CAZ83915.1.
RefSeqXP_002839724.1. XM_002839678.1.

3D structure databases

ProteinModelPortalD5GH90.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiCAZ83915; CAZ83915; GSTUM_00007799001.
GeneID9182620.
KEGGtml:GSTUM_00007799001.

Phylogenomic databases

KOK10747.
OMAFIMEGEV.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5GH90_TUBMM
AccessionPrimary (citable) accession number: D5GH90
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: November 13, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)