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D5GH50

- D5GH50_TUBMM

UniProt

D5GH50 - D5GH50_TUBMM

Protein

DNA ligase

Gene

GSTUM_00007703001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 24 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:GSTUM_00007703001Imported
    OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
    Taxonomic identifieri656061 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
    ProteomesiUP000006911: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD5GH50.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10777.
    OMAiHMCPSTK.
    OrthoDBiEOG7QC84G.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 2 hits.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5GH50-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSDIDDIDLP DIPRAPVDPS GDTFGPNVIL SDSDLDKAYP NRPRNKNPTL    50
    PFADLYLSLF EPLLANKKKR TGVSIRGTNK VLKPHEIRRN IIDRFISRWR 100
    NEVGNDIYPT LRLILCEKDR DRSVYHLKEK TIGRLLVKVM KINKDSDDGY 150
    SLINWKQPGT SKSAGDFALR CYEIIRKRPM RTTPGSLTIS QVNSMLDRLS 200
    LASKEEEQLP IMTEFYNNMN ASELMWLIRI IMRQMKVGAT ERTFFDAWHP 250
    DAAALFNISS SLKRVCWELS DPEFRMDSDG KSVSLMSCFQ PQLAQFQKRS 300
    LDDAVKAMHL TPEDPIFWIE EKLDGERMQM HYENGNFMFW SRKAKDYTRL 350
    YGSCFDDGSL TRHLRGAFDD GVKSIILDGE MITWDPRLDC IVAFGTLKTA 400
    ALEGIRNPFG DGPRPLFKVF DILHLNGGCL INYSLRDRRM ALERSVKTID 450
    RRMEVHKYEE AREAVEIERA LRKVIAEASE GLVIKNPRSI YRLNDRNDDW 500
    MKVKPEYMTE FGESLDLVVL GGYWGSGTRG GILSSYLCGL RVDGNHLKPG 550
    EDPMKFRSFC KVGGGFTAND YSKIAHMTDS QWVPWDPKKP PSEHIEIVAG 600
    GRGVDQPDVW IRPDKSIVLE VKAASIVPTD EFRVGKSLRF PRFRQIREDK 650
    DWQTALSISE LIALKEEVEK EKADEEKRIE VENRTRRAGK RMKREYTVLG 700
    ASDKPADFVS PTVEGGPRLF EGRSFYVMSD ATTPKKMGKA EVEQLIKSHG 750
    GNLYQTENAV PDTNVIGDKN NVKISALKKK GTHDVIRPAW IFDCIRQHEL 800
    DLQRGQKGCY IIPIEARHIL HAASGVERRA AASVDQFGDS YARDLTMEEI 850
    SNLLRDMPGA FDRTFASEFV KGLSEHDQRE LGELPGWMFK TFVIYVDREG 900
    QGEVNENLKP SPLLALFAGA RIALDLQDTE ITHIIASHDQ QRLHELREAI 950
    KWRPRIPRIV TRDWLKSSLE ARTVLDEEQF SPALGCVTGS A 991
    Length:991
    Mass (Da):113,000
    Last modified:June 15, 2010 - v1
    Checksum:iF9AB8C6AA89EBB71
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN430297 Genomic DNA. Translation: CAZ83843.1.
    RefSeqiXP_002839652.1. XM_002839606.1.
    UniGeneiTme.2866.

    Genome annotation databases

    EnsemblFungiiCAZ83843; CAZ83843; GSTUM_00007703001.
    GeneIDi9185097.
    KEGGitml:GSTUM_00007703001.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN430297 Genomic DNA. Translation: CAZ83843.1 .
    RefSeqi XP_002839652.1. XM_002839606.1.
    UniGenei Tme.2866.

    3D structure databases

    ProteinModelPortali D5GH50.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii CAZ83843 ; CAZ83843 ; GSTUM_00007703001 .
    GeneIDi 9185097.
    KEGGi tml:GSTUM_00007703001.

    Phylogenomic databases

    KOi K10777.
    OMAi HMCPSTK.
    OrthoDBi EOG7QC84G.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF00533. BRCT. 1 hit.
    PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 2 hits.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Mel28Imported.

    Entry informationi

    Entry nameiD5GH50_TUBMM
    AccessioniPrimary (citable) accession number: D5GH50
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 24 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3