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D5GH50

- D5GH50_TUBMM

UniProt

D5GH50 - D5GH50_TUBMM

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Protein
DNA ligase
Gene
GSTUM_00007703001
Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:GSTUM_00007703001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911: Unassembled WGS sequence

Structurei

3D structure databases

ProteinModelPortaliD5GH50.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10777.
OMAiHMCPSTK.
OrthoDBiEOG7QC84G.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GH50-1 [UniParc]FASTAAdd to Basket

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MSDIDDIDLP DIPRAPVDPS GDTFGPNVIL SDSDLDKAYP NRPRNKNPTL    50
PFADLYLSLF EPLLANKKKR TGVSIRGTNK VLKPHEIRRN IIDRFISRWR 100
NEVGNDIYPT LRLILCEKDR DRSVYHLKEK TIGRLLVKVM KINKDSDDGY 150
SLINWKQPGT SKSAGDFALR CYEIIRKRPM RTTPGSLTIS QVNSMLDRLS 200
LASKEEEQLP IMTEFYNNMN ASELMWLIRI IMRQMKVGAT ERTFFDAWHP 250
DAAALFNISS SLKRVCWELS DPEFRMDSDG KSVSLMSCFQ PQLAQFQKRS 300
LDDAVKAMHL TPEDPIFWIE EKLDGERMQM HYENGNFMFW SRKAKDYTRL 350
YGSCFDDGSL TRHLRGAFDD GVKSIILDGE MITWDPRLDC IVAFGTLKTA 400
ALEGIRNPFG DGPRPLFKVF DILHLNGGCL INYSLRDRRM ALERSVKTID 450
RRMEVHKYEE AREAVEIERA LRKVIAEASE GLVIKNPRSI YRLNDRNDDW 500
MKVKPEYMTE FGESLDLVVL GGYWGSGTRG GILSSYLCGL RVDGNHLKPG 550
EDPMKFRSFC KVGGGFTAND YSKIAHMTDS QWVPWDPKKP PSEHIEIVAG 600
GRGVDQPDVW IRPDKSIVLE VKAASIVPTD EFRVGKSLRF PRFRQIREDK 650
DWQTALSISE LIALKEEVEK EKADEEKRIE VENRTRRAGK RMKREYTVLG 700
ASDKPADFVS PTVEGGPRLF EGRSFYVMSD ATTPKKMGKA EVEQLIKSHG 750
GNLYQTENAV PDTNVIGDKN NVKISALKKK GTHDVIRPAW IFDCIRQHEL 800
DLQRGQKGCY IIPIEARHIL HAASGVERRA AASVDQFGDS YARDLTMEEI 850
SNLLRDMPGA FDRTFASEFV KGLSEHDQRE LGELPGWMFK TFVIYVDREG 900
QGEVNENLKP SPLLALFAGA RIALDLQDTE ITHIIASHDQ QRLHELREAI 950
KWRPRIPRIV TRDWLKSSLE ARTVLDEEQF SPALGCVTGS A 991
Length:991
Mass (Da):113,000
Last modified:June 15, 2010 - v1
Checksum:iF9AB8C6AA89EBB71
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430297 Genomic DNA. Translation: CAZ83843.1.
RefSeqiXP_002839652.1. XM_002839606.1.
UniGeneiTme.2866.

Genome annotation databases

EnsemblFungiiCAZ83843; CAZ83843; GSTUM_00007703001.
GeneIDi9185097.
KEGGitml:GSTUM_00007703001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430297 Genomic DNA. Translation: CAZ83843.1 .
RefSeqi XP_002839652.1. XM_002839606.1.
UniGenei Tme.2866.

3D structure databases

ProteinModelPortali D5GH50.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii CAZ83843 ; CAZ83843 ; GSTUM_00007703001 .
GeneIDi 9185097.
KEGGi tml:GSTUM_00007703001.

Phylogenomic databases

KOi K10777.
OMAi HMCPSTK.
OrthoDBi EOG7QC84G.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28.

Entry informationi

Entry nameiD5GH50_TUBMM
AccessioniPrimary (citable) accession number: D5GH50
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: November 13, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi