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D5GH50 (D5GH50_TUBMM) Unreviewed, UniProtKB/TrEMBL

Last modified November 13, 2013. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:GSTUM_00007703001 EMBL CAZ83843.1
OrganismTuber melanosporum (strain Mel28) (Perigord black truffle) [Reference proteome]
Taxonomic identifier656061 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber

Protein attributes

Sequence length991 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
D5GH50 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: F9AB8C6AA89EBB71

FASTA991113,000
        10         20         30         40         50         60 
MSDIDDIDLP DIPRAPVDPS GDTFGPNVIL SDSDLDKAYP NRPRNKNPTL PFADLYLSLF 

        70         80         90        100        110        120 
EPLLANKKKR TGVSIRGTNK VLKPHEIRRN IIDRFISRWR NEVGNDIYPT LRLILCEKDR 

       130        140        150        160        170        180 
DRSVYHLKEK TIGRLLVKVM KINKDSDDGY SLINWKQPGT SKSAGDFALR CYEIIRKRPM 

       190        200        210        220        230        240 
RTTPGSLTIS QVNSMLDRLS LASKEEEQLP IMTEFYNNMN ASELMWLIRI IMRQMKVGAT 

       250        260        270        280        290        300 
ERTFFDAWHP DAAALFNISS SLKRVCWELS DPEFRMDSDG KSVSLMSCFQ PQLAQFQKRS 

       310        320        330        340        350        360 
LDDAVKAMHL TPEDPIFWIE EKLDGERMQM HYENGNFMFW SRKAKDYTRL YGSCFDDGSL 

       370        380        390        400        410        420 
TRHLRGAFDD GVKSIILDGE MITWDPRLDC IVAFGTLKTA ALEGIRNPFG DGPRPLFKVF 

       430        440        450        460        470        480 
DILHLNGGCL INYSLRDRRM ALERSVKTID RRMEVHKYEE AREAVEIERA LRKVIAEASE 

       490        500        510        520        530        540 
GLVIKNPRSI YRLNDRNDDW MKVKPEYMTE FGESLDLVVL GGYWGSGTRG GILSSYLCGL 

       550        560        570        580        590        600 
RVDGNHLKPG EDPMKFRSFC KVGGGFTAND YSKIAHMTDS QWVPWDPKKP PSEHIEIVAG 

       610        620        630        640        650        660 
GRGVDQPDVW IRPDKSIVLE VKAASIVPTD EFRVGKSLRF PRFRQIREDK DWQTALSISE 

       670        680        690        700        710        720 
LIALKEEVEK EKADEEKRIE VENRTRRAGK RMKREYTVLG ASDKPADFVS PTVEGGPRLF 

       730        740        750        760        770        780 
EGRSFYVMSD ATTPKKMGKA EVEQLIKSHG GNLYQTENAV PDTNVIGDKN NVKISALKKK 

       790        800        810        820        830        840 
GTHDVIRPAW IFDCIRQHEL DLQRGQKGCY IIPIEARHIL HAASGVERRA AASVDQFGDS 

       850        860        870        880        890        900 
YARDLTMEEI SNLLRDMPGA FDRTFASEFV KGLSEHDQRE LGELPGWMFK TFVIYVDREG 

       910        920        930        940        950        960 
QGEVNENLKP SPLLALFAGA RIALDLQDTE ITHIIASHDQ QRLHELREAI KWRPRIPRIV 

       970        980        990 
TRDWLKSSLE ARTVLDEEQF SPALGCVTGS A 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN430297 Genomic DNA. Translation: CAZ83843.1.
RefSeqXP_002839652.1. XM_002839606.1.
UniGeneTme.2866.

3D structure databases

ProteinModelPortalD5GH50.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiCAZ83843; CAZ83843; GSTUM_00007703001.
GeneID9185097.
KEGGtml:GSTUM_00007703001.

Phylogenomic databases

KOK10777.
OMAHMCPSTK.
OrthoDBEOG7QC84G.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF00533. BRCT. 1 hit.
PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5GH50_TUBMM
AccessionPrimary (citable) accession number: D5GH50
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: November 13, 2013
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)