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D5GCR9

- D5GCR9_TUBMM

UniProt

D5GCR9 - D5GCR9_TUBMM

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Protein
DNA ligase
Gene
GSTUM_00005992001
Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:GSTUM_00005992001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10747.
OMAiRENNSHE.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GCR9-1 [UniParc]FASTAAdd to Basket

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MSSSKKQTTL GYVKSQTTLG RFFSLPAGTN PATPIQSKLK TISKPGKAAD    50
TDDVASPKVR KTSARGQARK KPTIPEDDGS DGGAGYTKAG VSFSETEMSD 100
ASEPAIGSSK QKALGNSSTK RERPAARKCG IKPSNIKKET ETSEDEAPPS 150
KRSKSAPTTK PLKKDCDESE LSDEDIAPRK RLPIINSPKA TAKKRKGKVV 200
GKAVDVNTPV SPSGTTKGAR SSPISSPVVS PQESGESEPP LPESPSSTPK 250
ISKSKSGSKA KVAKKSPSDK RSKKRGAASD TEAVDKPESS ATHKALDSDS 300
GTEKPSLAPA AGREMIKKLS KSVPPAYPDW VAGEPTPYAA LVTTFNLLES 350
TTKRLEKISH TSRFLRQVLQ LSPDELLLVI HLMINKLAAD FEGVEMGIGE 400
SLLMKAIGES CGRSLERIRE DQRECGDLGL VAMKSRNNQK TLFAPRPLTI 450
AVVHKGLLGI AKTKGEGGQG RKVSAIRKLL AAAKGDEAKF LIRGLEGKLR 500
LGLAERTVLV SLSSAMITHE QELVGKTPTT AMLDQSELNL RSVYSELPSY 550
EIIIPAMREH GIMDIKKYCK LQPGVPVKPM LAKPTKAISE VLDRFENKRF 600
TCEYKYDGER AQIHYVSPKS SIEYPPATLS GEPIKNLAKV FSRNSEDLSG 650
KYPDILAAMN EWVRPEVESF VLDCEAVGWD ETNNRLLPFQ MLQTRKKKDV 700
ALEDVKIRVC VHAFDLLFLN GKPVVRESLD DRRKLMHKTF IEVPNQFVFA 750
RYMDSSHLEE IRLFLDQSVK DSCEGLMVKM MDGPESFYEP SQRSRNWLKI 800
KKDYIDELGD SLDLVVIGAY WGRGKRTSVY GSFLLACYNP GTQNYESLCN 850
IGTGFTEAEL EEFYGTLHPL EIDRAKPFYD HPSGNAGKPD VWFEPKVLWE 900
VKAADLTLSP RYKAAAGLAG HPDKGVSLRF PRFIGPRTDK TGEDATSSSQ 950
IAEMYLRQDQ VAHKTGAKGV DDDFEY 976
Length:976
Mass (Da):107,077
Last modified:June 15, 2010 - v1
Checksum:i77612ADDCA79B985
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430120 Genomic DNA. Translation: CAZ82312.1.
RefSeqiXP_002838121.1. XM_002838075.1.
UniGeneiTme.4356.

Genome annotation databases

EnsemblFungiiCAZ82312; CAZ82312; GSTUM_00005992001.
GeneIDi9187931.
KEGGitml:GSTUM_00005992001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430120 Genomic DNA. Translation: CAZ82312.1 .
RefSeqi XP_002838121.1. XM_002838075.1.
UniGenei Tme.4356.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii CAZ82312 ; CAZ82312 ; GSTUM_00005992001 .
GeneIDi 9187931.
KEGGi tml:GSTUM_00005992001.

Phylogenomic databases

KOi K10747.
OMAi RENNSHE.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28.

Entry informationi

Entry nameiD5GCR9_TUBMM
AccessioniPrimary (citable) accession number: D5GCR9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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