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D5GCR9

- D5GCR9_TUBMM

UniProt

D5GCR9 - D5GCR9_TUBMM

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Protein

DNA ligase

Gene

GSTUM_00005992001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA biosynthetic process Source: InterPro
  2. DNA ligation involved in DNA repair Source: InterPro
  3. DNA recombination Source: UniProtKB-KW
  4. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:GSTUM_00005992001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911: Unassembled WGS sequence

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD5GCR9.
KOiK10747.
OMAiRENNSHE.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5GCR9-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MSSSKKQTTL GYVKSQTTLG RFFSLPAGTN PATPIQSKLK TISKPGKAAD
60 70 80 90 100
TDDVASPKVR KTSARGQARK KPTIPEDDGS DGGAGYTKAG VSFSETEMSD
110 120 130 140 150
ASEPAIGSSK QKALGNSSTK RERPAARKCG IKPSNIKKET ETSEDEAPPS
160 170 180 190 200
KRSKSAPTTK PLKKDCDESE LSDEDIAPRK RLPIINSPKA TAKKRKGKVV
210 220 230 240 250
GKAVDVNTPV SPSGTTKGAR SSPISSPVVS PQESGESEPP LPESPSSTPK
260 270 280 290 300
ISKSKSGSKA KVAKKSPSDK RSKKRGAASD TEAVDKPESS ATHKALDSDS
310 320 330 340 350
GTEKPSLAPA AGREMIKKLS KSVPPAYPDW VAGEPTPYAA LVTTFNLLES
360 370 380 390 400
TTKRLEKISH TSRFLRQVLQ LSPDELLLVI HLMINKLAAD FEGVEMGIGE
410 420 430 440 450
SLLMKAIGES CGRSLERIRE DQRECGDLGL VAMKSRNNQK TLFAPRPLTI
460 470 480 490 500
AVVHKGLLGI AKTKGEGGQG RKVSAIRKLL AAAKGDEAKF LIRGLEGKLR
510 520 530 540 550
LGLAERTVLV SLSSAMITHE QELVGKTPTT AMLDQSELNL RSVYSELPSY
560 570 580 590 600
EIIIPAMREH GIMDIKKYCK LQPGVPVKPM LAKPTKAISE VLDRFENKRF
610 620 630 640 650
TCEYKYDGER AQIHYVSPKS SIEYPPATLS GEPIKNLAKV FSRNSEDLSG
660 670 680 690 700
KYPDILAAMN EWVRPEVESF VLDCEAVGWD ETNNRLLPFQ MLQTRKKKDV
710 720 730 740 750
ALEDVKIRVC VHAFDLLFLN GKPVVRESLD DRRKLMHKTF IEVPNQFVFA
760 770 780 790 800
RYMDSSHLEE IRLFLDQSVK DSCEGLMVKM MDGPESFYEP SQRSRNWLKI
810 820 830 840 850
KKDYIDELGD SLDLVVIGAY WGRGKRTSVY GSFLLACYNP GTQNYESLCN
860 870 880 890 900
IGTGFTEAEL EEFYGTLHPL EIDRAKPFYD HPSGNAGKPD VWFEPKVLWE
910 920 930 940 950
VKAADLTLSP RYKAAAGLAG HPDKGVSLRF PRFIGPRTDK TGEDATSSSQ
960 970
IAEMYLRQDQ VAHKTGAKGV DDDFEY
Length:976
Mass (Da):107,077
Last modified:June 15, 2010 - v1
Checksum:i77612ADDCA79B985
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430120 Genomic DNA. Translation: CAZ82312.1.
RefSeqiXP_002838121.1. XM_002838075.1.
UniGeneiTme.4356.

Genome annotation databases

EnsemblFungiiCAZ82312; CAZ82312; GSTUM_00005992001.
GeneIDi9187931.
KEGGitml:GSTUM_00005992001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN430120 Genomic DNA. Translation: CAZ82312.1 .
RefSeqi XP_002838121.1. XM_002838075.1.
UniGenei Tme.4356.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii CAZ82312 ; CAZ82312 ; GSTUM_00005992001 .
GeneIDi 9187931.
KEGGi tml:GSTUM_00005992001.

Phylogenomic databases

InParanoidi D5GCR9.
KOi K10747.
OMAi RENNSHE.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28Imported.

Entry informationi

Entry nameiD5GCR9_TUBMM
AccessioniPrimary (citable) accession number: D5GCR9
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 29, 2014
This is version 23 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3