Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D5GCR9 (D5GCR9_TUBMM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
DNA ligase RuleBase RU000617

EC=6.5.1.1 RuleBase RU000617
Gene names
ORF Names:GSTUM_00005992001 EMBL CAZ82312.1
OrganismTuber melanosporum (strain Mel28) (Perigord black truffle) [Reference proteome]
Taxonomic identifier656061 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber

Protein attributes

Sequence length976 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m). RuleBase RU000617

Sequence similarities

Belongs to the ATP-dependent DNA ligase family.

Sequences

Sequence LengthMass (Da)Tools
D5GCR9 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 77612ADDCA79B985

FASTA976107,077
        10         20         30         40         50         60 
MSSSKKQTTL GYVKSQTTLG RFFSLPAGTN PATPIQSKLK TISKPGKAAD TDDVASPKVR 

        70         80         90        100        110        120 
KTSARGQARK KPTIPEDDGS DGGAGYTKAG VSFSETEMSD ASEPAIGSSK QKALGNSSTK 

       130        140        150        160        170        180 
RERPAARKCG IKPSNIKKET ETSEDEAPPS KRSKSAPTTK PLKKDCDESE LSDEDIAPRK 

       190        200        210        220        230        240 
RLPIINSPKA TAKKRKGKVV GKAVDVNTPV SPSGTTKGAR SSPISSPVVS PQESGESEPP 

       250        260        270        280        290        300 
LPESPSSTPK ISKSKSGSKA KVAKKSPSDK RSKKRGAASD TEAVDKPESS ATHKALDSDS 

       310        320        330        340        350        360 
GTEKPSLAPA AGREMIKKLS KSVPPAYPDW VAGEPTPYAA LVTTFNLLES TTKRLEKISH 

       370        380        390        400        410        420 
TSRFLRQVLQ LSPDELLLVI HLMINKLAAD FEGVEMGIGE SLLMKAIGES CGRSLERIRE 

       430        440        450        460        470        480 
DQRECGDLGL VAMKSRNNQK TLFAPRPLTI AVVHKGLLGI AKTKGEGGQG RKVSAIRKLL 

       490        500        510        520        530        540 
AAAKGDEAKF LIRGLEGKLR LGLAERTVLV SLSSAMITHE QELVGKTPTT AMLDQSELNL 

       550        560        570        580        590        600 
RSVYSELPSY EIIIPAMREH GIMDIKKYCK LQPGVPVKPM LAKPTKAISE VLDRFENKRF 

       610        620        630        640        650        660 
TCEYKYDGER AQIHYVSPKS SIEYPPATLS GEPIKNLAKV FSRNSEDLSG KYPDILAAMN 

       670        680        690        700        710        720 
EWVRPEVESF VLDCEAVGWD ETNNRLLPFQ MLQTRKKKDV ALEDVKIRVC VHAFDLLFLN 

       730        740        750        760        770        780 
GKPVVRESLD DRRKLMHKTF IEVPNQFVFA RYMDSSHLEE IRLFLDQSVK DSCEGLMVKM 

       790        800        810        820        830        840 
MDGPESFYEP SQRSRNWLKI KKDYIDELGD SLDLVVIGAY WGRGKRTSVY GSFLLACYNP 

       850        860        870        880        890        900 
GTQNYESLCN IGTGFTEAEL EEFYGTLHPL EIDRAKPFYD HPSGNAGKPD VWFEPKVLWE 

       910        920        930        940        950        960 
VKAADLTLSP RYKAAAGLAG HPDKGVSLRF PRFIGPRTDK TGEDATSSSQ IAEMYLRQDQ 

       970 
VAHKTGAKGV DDDFEY 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN430120 Genomic DNA. Translation: CAZ82312.1.
RefSeqXP_002838121.1. XM_002838075.1.
UniGeneTme.4356.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiCAZ82312; CAZ82312; GSTUM_00005992001.
GeneID9187931.
KEGGtml:GSTUM_00005992001.

Phylogenomic databases

KOK10747.
OMARENNSHE.
OrthoDBEOG7TXKRG.

Family and domain databases

Gene3D1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 2 hits.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR00574. dnl1. 1 hit.
PROSITEPS00697. DNA_LIGASE_A1. 1 hit.
PS00333. DNA_LIGASE_A2. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5GCR9_TUBMM
AccessionPrimary (citable) accession number: D5GCR9
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)