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Protein

DNA ligase

Gene

GSTUM_00005992001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed-Annotation score: -Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n)-3'-hydroxyl + 5'-phospho-(deoxyribonucleotide)(m) = (deoxyribonucleotide)(n+m) + AMP + diphosphate.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionLigaseUniRule annotation
Biological processDNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation
LigandATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:GSTUM_00005992001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
Proteomesi

Interactioni

Protein-protein interaction databases

STRINGi39416.CAZ82312

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini702 – 839DNA_LIGASE_A3InterPro annotationAdd BLAST138

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

InParanoidiD5GCR9
KOiK10747
OMAiWIKYKRD
OrthoDBiEOG092C0FHN

Family and domain databases

Gene3Di1.10.3260.10, 1 hit
InterProiView protein in InterPro
IPR000977 DNA_ligase_ATP-dep
IPR012309 DNA_ligase_ATP-dep_C
IPR012310 DNA_ligase_ATP-dep_cent
IPR016059 DNA_ligase_ATP-dep_CS
IPR012308 DNA_ligase_ATP-dep_N
IPR036599 DNA_ligase_N_sf
IPR012340 NA-bd_OB-fold
PfamiView protein in Pfam
PF04679 DNA_ligase_A_C, 1 hit
PF01068 DNA_ligase_A_M, 2 hits
PF04675 DNA_ligase_A_N, 1 hit
SUPFAMiSSF117018 SSF117018, 1 hit
SSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00574 dnl1, 1 hit
PROSITEiView protein in PROSITE
PS00697 DNA_LIGASE_A1, 1 hit
PS00333 DNA_LIGASE_A2, 1 hit
PS50160 DNA_LIGASE_A3, 1 hit

Sequencei

Sequence statusi: Complete.

D5GCR9-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSSKKQTTL GYVKSQTTLG RFFSLPAGTN PATPIQSKLK TISKPGKAAD
60 70 80 90 100
TDDVASPKVR KTSARGQARK KPTIPEDDGS DGGAGYTKAG VSFSETEMSD
110 120 130 140 150
ASEPAIGSSK QKALGNSSTK RERPAARKCG IKPSNIKKET ETSEDEAPPS
160 170 180 190 200
KRSKSAPTTK PLKKDCDESE LSDEDIAPRK RLPIINSPKA TAKKRKGKVV
210 220 230 240 250
GKAVDVNTPV SPSGTTKGAR SSPISSPVVS PQESGESEPP LPESPSSTPK
260 270 280 290 300
ISKSKSGSKA KVAKKSPSDK RSKKRGAASD TEAVDKPESS ATHKALDSDS
310 320 330 340 350
GTEKPSLAPA AGREMIKKLS KSVPPAYPDW VAGEPTPYAA LVTTFNLLES
360 370 380 390 400
TTKRLEKISH TSRFLRQVLQ LSPDELLLVI HLMINKLAAD FEGVEMGIGE
410 420 430 440 450
SLLMKAIGES CGRSLERIRE DQRECGDLGL VAMKSRNNQK TLFAPRPLTI
460 470 480 490 500
AVVHKGLLGI AKTKGEGGQG RKVSAIRKLL AAAKGDEAKF LIRGLEGKLR
510 520 530 540 550
LGLAERTVLV SLSSAMITHE QELVGKTPTT AMLDQSELNL RSVYSELPSY
560 570 580 590 600
EIIIPAMREH GIMDIKKYCK LQPGVPVKPM LAKPTKAISE VLDRFENKRF
610 620 630 640 650
TCEYKYDGER AQIHYVSPKS SIEYPPATLS GEPIKNLAKV FSRNSEDLSG
660 670 680 690 700
KYPDILAAMN EWVRPEVESF VLDCEAVGWD ETNNRLLPFQ MLQTRKKKDV
710 720 730 740 750
ALEDVKIRVC VHAFDLLFLN GKPVVRESLD DRRKLMHKTF IEVPNQFVFA
760 770 780 790 800
RYMDSSHLEE IRLFLDQSVK DSCEGLMVKM MDGPESFYEP SQRSRNWLKI
810 820 830 840 850
KKDYIDELGD SLDLVVIGAY WGRGKRTSVY GSFLLACYNP GTQNYESLCN
860 870 880 890 900
IGTGFTEAEL EEFYGTLHPL EIDRAKPFYD HPSGNAGKPD VWFEPKVLWE
910 920 930 940 950
VKAADLTLSP RYKAAAGLAG HPDKGVSLRF PRFIGPRTDK TGEDATSSSQ
960 970
IAEMYLRQDQ VAHKTGAKGV DDDFEY
Length:976
Mass (Da):107,077
Last modified:June 15, 2010 - v1
Checksum:i77612ADDCA79B985
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FN430120 Genomic DNA Translation: CAZ82312.1
RefSeqiXP_002838121.1, XM_002838075.1
UniGeneiTme.4356

Genome annotation databases

EnsemblFungiiCAZ82312; CAZ82312; GSTUM_00005992001
GeneIDi9187931
KEGGitml:GSTUM_00005992001

Similar proteinsi

Entry informationi

Entry nameiD5GCR9_TUBMM
AccessioniPrimary (citable) accession number: D5GCR9
Entry historyiIntegrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 23, 2018
This is version 40 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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