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D5GCR9

- D5GCR9_TUBMM

UniProt

D5GCR9 - D5GCR9_TUBMM

Protein

DNA ligase

Gene

GSTUM_00005992001

Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 22 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:GSTUM_00005992001Imported
    OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)Imported
    Taxonomic identifieri656061 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
    ProteomesiUP000006911: Unassembled WGS sequence

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10747.
    OMAiRENNSHE.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 2 hits.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5GCR9-1 [UniParc]FASTAAdd to Basket

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    MSSSKKQTTL GYVKSQTTLG RFFSLPAGTN PATPIQSKLK TISKPGKAAD    50
    TDDVASPKVR KTSARGQARK KPTIPEDDGS DGGAGYTKAG VSFSETEMSD 100
    ASEPAIGSSK QKALGNSSTK RERPAARKCG IKPSNIKKET ETSEDEAPPS 150
    KRSKSAPTTK PLKKDCDESE LSDEDIAPRK RLPIINSPKA TAKKRKGKVV 200
    GKAVDVNTPV SPSGTTKGAR SSPISSPVVS PQESGESEPP LPESPSSTPK 250
    ISKSKSGSKA KVAKKSPSDK RSKKRGAASD TEAVDKPESS ATHKALDSDS 300
    GTEKPSLAPA AGREMIKKLS KSVPPAYPDW VAGEPTPYAA LVTTFNLLES 350
    TTKRLEKISH TSRFLRQVLQ LSPDELLLVI HLMINKLAAD FEGVEMGIGE 400
    SLLMKAIGES CGRSLERIRE DQRECGDLGL VAMKSRNNQK TLFAPRPLTI 450
    AVVHKGLLGI AKTKGEGGQG RKVSAIRKLL AAAKGDEAKF LIRGLEGKLR 500
    LGLAERTVLV SLSSAMITHE QELVGKTPTT AMLDQSELNL RSVYSELPSY 550
    EIIIPAMREH GIMDIKKYCK LQPGVPVKPM LAKPTKAISE VLDRFENKRF 600
    TCEYKYDGER AQIHYVSPKS SIEYPPATLS GEPIKNLAKV FSRNSEDLSG 650
    KYPDILAAMN EWVRPEVESF VLDCEAVGWD ETNNRLLPFQ MLQTRKKKDV 700
    ALEDVKIRVC VHAFDLLFLN GKPVVRESLD DRRKLMHKTF IEVPNQFVFA 750
    RYMDSSHLEE IRLFLDQSVK DSCEGLMVKM MDGPESFYEP SQRSRNWLKI 800
    KKDYIDELGD SLDLVVIGAY WGRGKRTSVY GSFLLACYNP GTQNYESLCN 850
    IGTGFTEAEL EEFYGTLHPL EIDRAKPFYD HPSGNAGKPD VWFEPKVLWE 900
    VKAADLTLSP RYKAAAGLAG HPDKGVSLRF PRFIGPRTDK TGEDATSSSQ 950
    IAEMYLRQDQ VAHKTGAKGV DDDFEY 976
    Length:976
    Mass (Da):107,077
    Last modified:June 15, 2010 - v1
    Checksum:i77612ADDCA79B985
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN430120 Genomic DNA. Translation: CAZ82312.1.
    RefSeqiXP_002838121.1. XM_002838075.1.
    UniGeneiTme.4356.

    Genome annotation databases

    EnsemblFungiiCAZ82312; CAZ82312; GSTUM_00005992001.
    GeneIDi9187931.
    KEGGitml:GSTUM_00005992001.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    FN430120 Genomic DNA. Translation: CAZ82312.1 .
    RefSeqi XP_002838121.1. XM_002838075.1.
    UniGenei Tme.4356.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblFungii CAZ82312 ; CAZ82312 ; GSTUM_00005992001 .
    GeneIDi 9187931.
    KEGGi tml:GSTUM_00005992001.

    Phylogenomic databases

    KOi K10747.
    OMAi RENNSHE.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 2 hits.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS00333. DNA_LIGASE_A2. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Mel28Imported.

    Entry informationi

    Entry nameiD5GCR9_TUBMM
    AccessioniPrimary (citable) accession number: D5GCR9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 22 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3