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D5G562

- D5G562_TUBMM

UniProt

D5G562 - D5G562_TUBMM

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Protein
Histone H2B
Gene
GSTUM_00000270001
Organism
Tuber melanosporum (strain Mel28) (Perigord black truffle)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. DNA binding Source: UniProtKB-KW

GO - Biological processi

  1. nucleosome assembly Source: InterPro
Complete GO annotation...

Keywords - Ligandi

DNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Histone H2BUniRule annotation
Gene namesi
ORF Names:GSTUM_00000270001Imported
OrganismiTuber melanosporum (strain Mel28) (Perigord black truffle)
Taxonomic identifieri656061 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber
ProteomesiUP000006911: Unassembled WGS sequence

Subcellular locationi

Nucleus By similarity UniRule annotation
Nucleus. Chromosome By similarity SAAS annotations

GO - Cellular componenti

  1. nucleosome Source: UniProtKB-KW
  2. nucleus Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

Chromosome, Nucleosome coreUniRule annotationSAAS annotations, NucleusUniRule annotationSAAS annotations

PTM / Processingi

Keywords - PTMi

Isopeptide bondSAAS annotations

Interactioni

Subunit structurei

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity.UniRule annotation

Structurei

3D structure databases

ProteinModelPortaliD5G562.

Family & Domainsi

Sequence similaritiesi

Belongs to the histone H2B family.UniRule annotation

Phylogenomic databases

KOiK11252.
OMAiRITRRET.
OrthoDBiEOG7WHHPK.

Family and domain databases

Gene3Di1.10.20.10. 1 hit.
InterProiIPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR000558. Histone_H2B.
[Graphical view]
PANTHERiPTHR23428. PTHR23428. 1 hit.
PfamiPF00125. Histone. 1 hit.
[Graphical view]
PRINTSiPR00621. HISTONEH2B.
SMARTiSM00427. H2B. 1 hit.
[Graphical view]
SUPFAMiSSF47113. SSF47113. 1 hit.
PROSITEiPS00357. HISTONE_H2B. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5G562-1 [UniParc]FASTAAdd to Basket

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MPPKAAEKKP TTAGKAPAGK APEKKEAGKK TAAASGEKKK RSKTRKETYS    50
SYIYKVLKQV HPDTGISNRA MSILNSFVND IFERVATEAS KLAAYNKKST 100
ISSREIQTSV RLILPGELAK HAVSEGTKAV TKYSSSTK 138
Length:138
Mass (Da):14,914
Last modified:June 15, 2010 - v1
Checksum:i10ABC92140CE8B53
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN429996 Genomic DNA. Translation: CAZ79647.1.
RefSeqiXP_002835490.1. XM_002835444.1.
UniGeneiTme.6937.

Genome annotation databases

EnsemblFungiiCAZ79647; CAZ79647; GSTUM_00000270001.
GeneIDi9186345.
KEGGitml:GSTUM_00000270001.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FN429996 Genomic DNA. Translation: CAZ79647.1 .
RefSeqi XP_002835490.1. XM_002835444.1.
UniGenei Tme.6937.

3D structure databases

ProteinModelPortali D5G562.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblFungii CAZ79647 ; CAZ79647 ; GSTUM_00000270001 .
GeneIDi 9186345.
KEGGi tml:GSTUM_00000270001.

Phylogenomic databases

KOi K11252.
OMAi RITRRET.
OrthoDBi EOG7WHHPK.

Family and domain databases

Gene3Di 1.10.20.10. 1 hit.
InterProi IPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR000558. Histone_H2B.
[Graphical view ]
PANTHERi PTHR23428. PTHR23428. 1 hit.
Pfami PF00125. Histone. 1 hit.
[Graphical view ]
PRINTSi PR00621. HISTONEH2B.
SMARTi SM00427. H2B. 1 hit.
[Graphical view ]
SUPFAMi SSF47113. SSF47113. 1 hit.
PROSITEi PS00357. HISTONE_H2B. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Mel28.

Entry informationi

Entry nameiD5G562_TUBMM
AccessioniPrimary (citable) accession number: D5G562
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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