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D5G562 (D5G562_TUBMM) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Histone H2B RuleBase RU000451
Gene names
ORF Names:GSTUM_00000270001 EMBL CAZ79647.1
OrganismTuber melanosporum (strain Mel28) (Perigord black truffle) [Reference proteome]
Taxonomic identifier656061 [NCBI]
Taxonomic lineageEukaryotaFungiDikaryaAscomycotaPezizomycotinaPezizomycetesPezizalesTuberaceaeTuber

Protein attributes

Sequence length138 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Subunit structure

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA By similarity. RuleBase RU000451

Subcellular location

Nucleus By similarity RuleBase RU000451.

Nucleus. Chromosome By similarity SAAS SAAS000558.

Sequence similarities

Belongs to the histone H2B family. RuleBase RU000451

Ontologies

Keywords
   Cellular componentChromosome
Nucleosome core SAAS SAAS000558 RuleBase RU000451
Nucleus RuleBase RU000451 SAAS SAAS000558
   LigandDNA-binding
   PTMIsopeptide bond SAAS SAAS000558
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processnucleosome assembly

Inferred from electronic annotation. Source: InterPro

   Cellular_componentnucleosome

Inferred from electronic annotation. Source: UniProtKB-KW

nucleus

Inferred from electronic annotation. Source: UniProtKB-SubCell

   Molecular_functionDNA binding

Inferred from electronic annotation. Source: UniProtKB-KW

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5G562 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 10ABC92140CE8B53

FASTA13814,914
        10         20         30         40         50         60 
MPPKAAEKKP TTAGKAPAGK APEKKEAGKK TAAASGEKKK RSKTRKETYS SYIYKVLKQV 

        70         80         90        100        110        120 
HPDTGISNRA MSILNSFVND IFERVATEAS KLAAYNKKST ISSREIQTSV RLILPGELAK 

       130 
HAVSEGTKAV TKYSSSTK 

« Hide

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
FN429996 Genomic DNA. Translation: CAZ79647.1.
RefSeqXP_002835490.1. XM_002835444.1.
UniGeneTme.6937.

3D structure databases

ProteinModelPortalD5G562.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblFungiCAZ79647; CAZ79647; GSTUM_00000270001.
GeneID9186345.
KEGGtml:GSTUM_00000270001.

Phylogenomic databases

KOK11252.
OMARITRRET.
OrthoDBEOG7WHHPK.

Family and domain databases

Gene3D1.10.20.10. 1 hit.
InterProIPR009072. Histone-fold.
IPR007125. Histone_core_D.
IPR000558. Histone_H2B.
[Graphical view]
PANTHERPTHR23428. PTHR23428. 1 hit.
PfamPF00125. Histone. 1 hit.
[Graphical view]
PRINTSPR00621. HISTONEH2B.
SMARTSM00427. H2B. 1 hit.
[Graphical view]
SUPFAMSSF47113. SSF47113. 1 hit.
PROSITEPS00357. HISTONE_H2B. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5G562_TUBMM
AccessionPrimary (citable) accession number: D5G562
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)