D5ECS6 (D5ECS6_AMICL) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADE56358.1
EC=5.1.1.1 EMBL ADE56358.1

Gene names

Ordered Locus Names:

Amico_0212

Organism

Aminobacterium colombiense (strain DSM 12261 / ALA-1) [Complete proteome] [HAMAP] EMBL ADE56358.1

Taxonomic identifier

572547 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Synergistetes › Synergistia › Synergistales › Synergistaceae › Aminobacterium › Aminobacterium colombiense

Protein attributes

Sequence length	374 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS011079
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079 EMBL ADE56358.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5ECS6 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: EBADE8BFCFA1E59F	FASTA	374	40,802
	10 20 30 40 50 60 MSWRPTRLEV DLEKVRNNYR AIRKHVGESV RIFGVVKGDA YNLGADKIGR VLADMGVDFF 70 80 90 100 110 120 AVATGDEAIS LRESGIESPI LVLGPSPYGI AEEYVRLGIR AAINDKGIAK ALSDASVRLQ 130 140 150 160 170 180 KPAYGHVKID SGMGRIGFFP HEAADAVEEI SHLPGLNLEG IFTHFAISDA RDLTYTYEQH 190 200 210 220 230 240 STFVKVIGEL EKRGITFSIK HCCNSGATLA LPQFVMDGVR PGQLVVGMYP SKEVVRSIAI 250 260 270 280 290 300 EPVFEFKTAI SAIRTVPAGK KLSYGLTYET TADERIAVIP VGYHDGYSRE LSGKGTEVLI 310 320 330 340 350 360 HGKRCPIVGR ICMDQALVDV SVLQNPQIGD EVVLLGKQGE ETITGDEIAD KIGTIFTTLP 370 NMIGKRVPRV YLNE

References

[1]

"Complete genome sequence of Aminobacterium colombiense type strain (ALA-1)." Chertkov O., Sikorski J., Brambilla E., Lapidus A., Copeland A., Glavina Del Rio T., Nolan M., Lucas S., Tice H., Cheng J., Han C., Detter J., Bruce D., Tapia R., Goodwin L., Pitluck S., Liolios K., Ivanova N. , Mavromatis K., Ovchinnikova G., Pati A., Chen A., Palaniappan K., Land M., Hauser L., Chang Y., Jeffries C., Spring S., Rohde M., Goker M., Bristow J., Eisen J., Markowitz V., Hugenholtz P., Kyrpides N., Klenk H. Stand. Genomic Sci. 2:280-289(2010) Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 12261 / ALA-1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001997 Genomic DNA. Translation: ADE56358.1.
RefSeq	YP_003553082.1. NC_014011.1.
3D structure databases
ProteinModelPortal	D5ECS6.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADE56358; ADE56358; Amico_0212.
GeneID	8963110.
KEGG	aco:Amico_0212.
PATRIC	35452560. VBIAmiCol31354_0222.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	THFAQST.
Enzyme and pathway databases
BioCyc	ACOL572547:GHQ0-212-MONOMER.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D5ECS6_AMICL

Accession

Primary (citable) accession number: D5ECS6

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)