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D5ECQ3

- D5ECQ3_AMICL

UniProt

D5ECQ3 - D5ECQ3_AMICL

Protein
Submitted name:

D-alanine--D-alanine ligase

Gene

Amico_0188

Organism
Aminobacterium colombiense (strain DSM 12261 / ALA-1)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 27 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Cell wall formation.SAAS annotation

    Catalytic activityi

    ATP + 2 D-alanine = ADP + phosphate + D-alanyl-D-alanine.SAAS annotation

    Cofactori

    Binds 2 magnesium or manganese ions per subunit.SAAS annotation

    Pathwayi

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. D-alanine-D-alanine ligase activity Source: UniProtKB-EC
    3. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. peptidoglycan biosynthetic process Source: UniProtKB-UniPathway
    2. regulation of cell shape Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseSAAS annotationImported

    Keywords - Biological processi

    Cell shape, Cell wall biogenesis/degradationSAAS annotation, Peptidoglycan synthesisSAAS annotation

    Keywords - Ligandi

    ATP-bindingSAAS annotation, MagnesiumSAAS annotation, ManganeseSAAS annotation, Metal-bindingSAAS annotation, Nucleotide-binding

    Enzyme and pathway databases

    BioCyciACOL572547:GHQ0-188-MONOMER.
    UniPathwayiUPA00219.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    D-alanine--D-alanine ligaseImported (EC:6.3.2.4Imported)
    Gene namesi
    Ordered Locus Names:Amico_0188Imported
    OrganismiAminobacterium colombiense (strain DSM 12261 / ALA-1)Imported
    Taxonomic identifieri572547 [NCBI]
    Taxonomic lineageiBacteriaSynergistetesSynergistiaSynergistalesSynergistaceaeAminobacterium
    ProteomesiUP000002366: Chromosome

    Subcellular locationi

    Cytoplasm SAAS annotation

    GO - Cellular componenti

    1. cytoplasm Source: UniProtKB-SubCell

    Keywords - Cellular componenti

    CytoplasmSAAS annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD5ECQ3.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Contains ATP-grasp domain.SAAS annotation

    Phylogenomic databases

    HOGENOMiHOG000011592.
    KOiK01921.
    OMAiFLEVNPL.

    Family and domain databases

    Gene3Di3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProiIPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view]
    PANTHERiPTHR23132. PTHR23132. 1 hit.
    PfamiPF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF52440. SSF52440. 1 hit.
    PROSITEiPS50975. ATP_GRASP. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5ECQ3-1 [UniParc]FASTAAdd to Basket

    « Hide

    MERRHEEERE NPLPLKKRKK EVQVIGITYN LRKDAQADEP DDIYEEYDCL    50
    ETVEALSNEI ASLGFQVFLF EQNELLLQKL DSIAPDFVLN IAEGLGNYRG 100
    RESQVPCILE SLNIPFSGSD SASLAIALDK VLTSHVLRAS NIPAPKNYVA 150
    KLPQDTTEKK VIFNTCQKYI IKPRWEGSSK GIFLDSIADT PEKVKTCIKR 200
    IWERYNQPAI VEEFLPGIEI TAGVAGNTQP KCIGMMSITP VTENSSFLYS 250
    LEEKRNYLER IRYSGPDSMS PQLRKKIGDL AVRAFKALEL RDIARIDFRL 300
    DDKGQPRVID INPLPGLSPA YSDLPILYRL SGGEYSELIQ TILREAFSRY 350
    GLCAPCLNKP ELVREKA 367
    Length:367
    Mass (Da):41,517
    Last modified:June 15, 2010 - v1
    Checksum:i02D15E90D7BF5105
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001997 Genomic DNA. Translation: ADE56335.1.
    RefSeqiWP_013047601.1. NC_014011.1.
    YP_003553059.1. NC_014011.1.

    Genome annotation databases

    EnsemblBacteriaiADE56335; ADE56335; Amico_0188.
    GeneIDi8963086.
    KEGGiaco:Amico_0188.
    PATRICi35452510. VBIAmiCol31354_0197.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001997 Genomic DNA. Translation: ADE56335.1 .
    RefSeqi WP_013047601.1. NC_014011.1.
    YP_003553059.1. NC_014011.1.

    3D structure databases

    ProteinModelPortali D5ECQ3.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADE56335 ; ADE56335 ; Amico_0188 .
    GeneIDi 8963086.
    KEGGi aco:Amico_0188.
    PATRICi 35452510. VBIAmiCol31354_0197.

    Phylogenomic databases

    HOGENOMi HOG000011592.
    KOi K01921.
    OMAi FLEVNPL.

    Enzyme and pathway databases

    UniPathwayi UPA00219 .
    BioCyci ACOL572547:GHQ0-188-MONOMER.

    Family and domain databases

    Gene3Di 3.30.1490.20. 1 hit.
    3.30.470.20. 1 hit.
    InterProi IPR011761. ATP-grasp.
    IPR013815. ATP_grasp_subdomain_1.
    IPR013816. ATP_grasp_subdomain_2.
    IPR005905. D_ala_D_ala.
    IPR011095. Dala_Dala_lig_C.
    IPR016185. PreATP-grasp_dom.
    [Graphical view ]
    PANTHERi PTHR23132. PTHR23132. 1 hit.
    Pfami PF07478. Dala_Dala_lig_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF52440. SSF52440. 1 hit.
    PROSITEi PS50975. ATP_GRASP. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 12261 / ALA-1Imported.

    Entry informationi

    Entry nameiD5ECQ3_AMICL
    AccessioniPrimary (citable) accession number: D5ECQ3
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 27 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3