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D5DME4 (D5DME4_BACMD) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=3.2.1.1 EMBL ADF42028.1
Gene names
Name:amyL EMBL ADF42028.1
Ordered Locus Names:BMD_5229 EMBL ADF42028.1
OrganismBacillus megaterium (strain DSM 319) [Complete proteome] [HAMAP] EMBL ADF42028.1
Taxonomic identifier592022 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length483 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionGlycosidase EMBL ADF42028.1
Hydrolase
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarbohydrate metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functionalpha-amylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

calcium ion binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5DME4 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 872863FBA4031B1E

FASTA48356,090
        10         20         30         40         50         60 
MERNHTIMQF FEWHVPADGE HWQRLKELAP QLKEQGIDSV WIPPVTKGVS SEDNGYGVYD 

        70         80         90        100        110        120 
LYDLGEFDQK GTVRTKYGTK QELHEAIDAC HNHGINVYVD IVMNHKAAAD EKETFHVIEV 

       130        140        150        160        170        180 
DPMNRTEEIS EPFEIEGWTK FTFEGRGDQY SSFKWNFNHF NGTDYDDKNG KEGVFRIAGE 

       190        200        210        220        230        240 
NKSWNENVDQ EFGNYDYLMF ANIDYNHPEV REEMIKWGKW LADTLQCDGY RLDAIKHINH 

       250        260        270        280        290        300 
DFIKEFAHEL SSSQEKPFYF VGEFWNPELT ACQEFLDVID YQIDLFDVSL HYKLHEASQQ 

       310        320        330        340        350        360 
GRDFDLTTIF DDTLVKTHPL NVVTFVDNHD SQPNESLESW VEDWFKQSAY ALILLREDGY 

       370        380        390        400        410        420 
PCVFYGDYFG IGGEHPIKGK EKDISALLHV RYDKAYGQQD DYFDHPNTIG WVRHGVEEFE 

       430        440        450        460        470        480 
KSGCAVVISN GEDGEKRMFV GEHRSGQTWI DFTNNREDQV VIEEDGYGQF PVNGGSVSVW 


AEA 

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References

[1]"Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure."
Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 319.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001982 Genomic DNA. Translation: ADF42028.1.
RefSeqYP_003600378.1. NC_014103.1.

3D structure databases

ProteinModelPortalD5DME4.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADF42028; ADF42028; BMD_5229.
GeneID9120620.
KEGGbmd:BMD_5229.
PATRIC37260651. VBIBacMeg104484_5209.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000094847.
KOK01176.
OMAFNGTDYD.

Enzyme and pathway databases

BioCycBMEG592022:GIVX-5229-MONOMER.

Family and domain databases

Gene3D2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERPTHR10357. PTHR10357. 1 hit.
PfamPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMSSF51445. SSF51445. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5DME4_BACMD
AccessionPrimary (citable) accession number: D5DME4
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 16, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)