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D5DME4

- D5DME4_BACMD

UniProt

D5DME4 - D5DME4_BACMD

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Protein
Submitted name:

Alpha-amylase

Gene

amyL

Organism
Bacillus megaterium (strain DSM 319)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. alpha-amylase activity Source: UniProtKB-EC
  2. calcium ion binding Source: InterPro

GO - Biological processi

  1. carbohydrate metabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyciBMEG592022:GIVX-5229-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Alpha-amylaseImported (EC:3.2.1.1Imported)
Gene namesi
Name:amyLImported
Ordered Locus Names:BMD_5229Imported
OrganismiBacillus megaterium (strain DSM 319)Imported
Taxonomic identifieri592022 [NCBI]
Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
ProteomesiUP000002365: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD5DME4.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000094847.
KOiK01176.
OMAiFNGTDYD.

Family and domain databases

Gene3Di2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view]
PIRSFiPIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTiSM00642. Aamy. 1 hit.
[Graphical view]
SUPFAMiSSF51445. SSF51445. 1 hit.

Sequencei

Sequence statusi: Complete.

D5DME4-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MERNHTIMQF FEWHVPADGE HWQRLKELAP QLKEQGIDSV WIPPVTKGVS
60 70 80 90 100
SEDNGYGVYD LYDLGEFDQK GTVRTKYGTK QELHEAIDAC HNHGINVYVD
110 120 130 140 150
IVMNHKAAAD EKETFHVIEV DPMNRTEEIS EPFEIEGWTK FTFEGRGDQY
160 170 180 190 200
SSFKWNFNHF NGTDYDDKNG KEGVFRIAGE NKSWNENVDQ EFGNYDYLMF
210 220 230 240 250
ANIDYNHPEV REEMIKWGKW LADTLQCDGY RLDAIKHINH DFIKEFAHEL
260 270 280 290 300
SSSQEKPFYF VGEFWNPELT ACQEFLDVID YQIDLFDVSL HYKLHEASQQ
310 320 330 340 350
GRDFDLTTIF DDTLVKTHPL NVVTFVDNHD SQPNESLESW VEDWFKQSAY
360 370 380 390 400
ALILLREDGY PCVFYGDYFG IGGEHPIKGK EKDISALLHV RYDKAYGQQD
410 420 430 440 450
DYFDHPNTIG WVRHGVEEFE KSGCAVVISN GEDGEKRMFV GEHRSGQTWI
460 470 480
DFTNNREDQV VIEEDGYGQF PVNGGSVSVW AEA
Length:483
Mass (Da):56,090
Last modified:June 15, 2010 - v1
Checksum:i872863FBA4031B1E
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001982 Genomic DNA. Translation: ADF42028.1.
RefSeqiYP_003600378.1. NC_014103.1.

Genome annotation databases

EnsemblBacteriaiADF42028; ADF42028; BMD_5229.
GeneIDi9120620.
KEGGibmd:BMD_5229.
PATRICi37260651. VBIBacMeg104484_5209.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001982 Genomic DNA. Translation: ADF42028.1 .
RefSeqi YP_003600378.1. NC_014103.1.

3D structure databases

ProteinModelPortali D5DME4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADF42028 ; ADF42028 ; BMD_5229 .
GeneIDi 9120620.
KEGGi bmd:BMD_5229.
PATRICi 37260651. VBIBacMeg104484_5209.

Phylogenomic databases

HOGENOMi HOG000094847.
KOi K01176.
OMAi FNGTDYD.

Enzyme and pathway databases

BioCyci BMEG592022:GIVX-5229-MONOMER.

Family and domain databases

Gene3Di 2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR013776. A-amylase_thermo.
IPR015237. Alpha-amylase_C_pro.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR006589. Glyco_hydro_13_sub_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
PF09154. DUF1939. 1 hit.
[Graphical view ]
PIRSFi PIRSF001021. Alph-amls_thrmst. 1 hit.
SMARTi SM00642. Aamy. 1 hit.
[Graphical view ]
SUPFAMi SSF51445. SSF51445. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure."
    Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S.
    Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 319Imported.

Entry informationi

Entry nameiD5DME4_BACMD
AccessioniPrimary (citable) accession number: D5DME4
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 1, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3