D5DFE4 (D5DFE4_BACMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Recommended name:
Superoxide dismutase [Cu-Zn] RuleBase RU000393
EC=1.15.1.1 RuleBase RU000393

Gene names

Name:	sodC EMBL ADF38944.1
Ordered Locus Names:	BMD_2091 EMBL ADF38944.1

Organism

Bacillus megaterium (strain DSM 319) [Complete proteome] [HAMAP] EMBL ADF38944.1

Taxonomic identifier

592022 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus megaterium

Protein attributes

Sequence length	196 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Function	Destroys radicals which are normally produced within the cells and which are toxic to biological systems By similarity. RuleBase RU000393
Catalytic activity	2 superoxide + 2 H+ = O2 + H2O2. RuleBase RU000393
Cofactor	Binds 1 copper ion per subunit By similarity. RuleBase RU000393 Binds 1 zinc ion per subunit By similarity. RuleBase RU000393
Sequence similarities	Belongs to the Cu-Zn superoxide dismutase family. RuleBase RU000393

Ontologies

Keywords
Ligand	Copper RuleBase RU000393 Metal-binding RuleBase RU000393 Zinc RuleBase RU000393
Molecular function	Oxidoreductase RuleBase RU000393 EMBL ADF38944.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	superoxide metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	metal ion binding Inferred from electronic annotation. Source: UniProtKB-KW superoxide dismutase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5DFE4 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: B69B70DD1075E7E9	FASTA	196	21,030
	10 20 30 40 50 60 MQKLIMNGCV VFVLLLLGAC SMVKEQNTAH ENHLKTEEAK ETSEVSVEPV KVDLTNTSGK 70 80 90 100 110 120 KVGEATLSEA KNGVHIKLTA QGLSPGRHGF HIHEIGKCEV PDFKTAGAHF NPFKREHGLK 130 140 150 160 170 180 NTKGPHAGDL PNLEVAPNGK VDTEIFASLV TLQEGKPNSL LDMDGSALVI HDKVDDYTTD 190 PSGNSGDRIV CGVITK

References

[1]

"Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure." Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 319.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001982 Genomic DNA. Translation: ADF38944.1.
RefSeq	YP_003597294.1. NC_014103.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADF38944; ADF38944; BMD_2091.
GeneID	9117482.
KEGG	bmd:BMD_2091.
PATRIC	37254223. VBIBacMeg104484_2037.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000263448.
KO	K04565.
Enzyme and pathway databases
BioCyc	BMEG592022:GIVX-2091-MONOMER.
Family and domain databases
Gene3D	2.60.40.200. 1 hit.
InterPro	IPR024136. SOD_Cu/Zn. IPR024134. SOD_Cu/Zn_/chaperones. IPR018152. SOD_Cu/Zn_BS. IPR001424. SOD_Cu_Zn_dom. [Graphical view]
PANTHER	PTHR10003. PTHR10003. 1 hit. PTHR10003:SF11. PTHR10003:SF11. 1 hit.
Pfam	PF00080. Sod_Cu. 1 hit. [Graphical view]
SUPFAM	SSF49329. SOD_Cu_Zn. 1 hit.
PROSITE	PS00332. SOD_CU_ZN_2. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5DFE4_BACMD

Accession

Primary (citable) accession number: D5DFE4

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)