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D5DFE4

- D5DFE4_BACMD

UniProt

D5DFE4 - D5DFE4_BACMD

Protein

Superoxide dismutase [Cu-Zn]

Gene

sodC

Organism
Bacillus megaterium (strain DSM 319)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 30 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.UniRule annotation

    Cofactori

    Binds 1 copper ion per subunit.UniRule annotation
    Binds 1 zinc ion per subunit.UniRule annotation

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotationImported

    Keywords - Ligandi

    CopperUniRule annotation, Metal-bindingUniRule annotation, ZincUniRule annotation

    Enzyme and pathway databases

    BioCyciBMEG592022:GIVX-2091-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutase [Cu-Zn]UniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodCImported
    Ordered Locus Names:BMD_2091Imported
    OrganismiBacillus megaterium (strain DSM 319)Imported
    Taxonomic identifieri592022 [NCBI]
    Taxonomic lineageiBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus
    ProteomesiUP000002365: Chromosome

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the Cu-Zn superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000263448.
    KOiK04565.
    OMAiPEANETG.

    Family and domain databases

    Gene3Di2.60.40.200. 1 hit.
    InterProiIPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view]
    PfamiPF00080. Sod_Cu. 1 hit.
    [Graphical view]
    SUPFAMiSSF49329. SSF49329. 1 hit.
    PROSITEiPS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5DFE4-1 [UniParc]FASTAAdd to Basket

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    MQKLIMNGCV VFVLLLLGAC SMVKEQNTAH ENHLKTEEAK ETSEVSVEPV    50
    KVDLTNTSGK KVGEATLSEA KNGVHIKLTA QGLSPGRHGF HIHEIGKCEV 100
    PDFKTAGAHF NPFKREHGLK NTKGPHAGDL PNLEVAPNGK VDTEIFASLV 150
    TLQEGKPNSL LDMDGSALVI HDKVDDYTTD PSGNSGDRIV CGVITK 196
    Length:196
    Mass (Da):21,030
    Last modified:June 15, 2010 - v1
    Checksum:iB69B70DD1075E7E9
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001982 Genomic DNA. Translation: ADF38944.1.
    RefSeqiWP_013082962.1. NC_014103.1.
    YP_003597294.1. NC_014103.1.

    Genome annotation databases

    EnsemblBacteriaiADF38944; ADF38944; BMD_2091.
    GeneIDi9117482.
    KEGGibmd:BMD_2091.
    PATRICi37254223. VBIBacMeg104484_2037.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001982 Genomic DNA. Translation: ADF38944.1 .
    RefSeqi WP_013082962.1. NC_014103.1.
    YP_003597294.1. NC_014103.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADF38944 ; ADF38944 ; BMD_2091 .
    GeneIDi 9117482.
    KEGGi bmd:BMD_2091.
    PATRICi 37254223. VBIBacMeg104484_2037.

    Phylogenomic databases

    HOGENOMi HOG000263448.
    KOi K04565.
    OMAi PEANETG.

    Enzyme and pathway databases

    BioCyci BMEG592022:GIVX-2091-MONOMER.

    Family and domain databases

    Gene3Di 2.60.40.200. 1 hit.
    InterProi IPR018152. SOD_Cu/Zn_BS.
    IPR001424. SOD_Cu_Zn_dom.
    [Graphical view ]
    Pfami PF00080. Sod_Cu. 1 hit.
    [Graphical view ]
    SUPFAMi SSF49329. SSF49329. 1 hit.
    PROSITEi PS00332. SOD_CU_ZN_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure."
      Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S.
      Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 319Imported.

    Entry informationi

    Entry nameiD5DFE4_BACMD
    AccessioniPrimary (citable) accession number: D5DFE4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 30 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3