D5DEK8 (D5DEK8_BACMD) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Glutamate decarboxylase EMBL ADF39290.1
EC=4.1.1.15 EMBL ADF39290.1

Gene names

Ordered Locus Names:

BMD_2444

Organism

Bacillus megaterium (strain DSM 319) [Complete proteome] [HAMAP] EMBL ADF39290.1

Taxonomic identifier

592022 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Firmicutes › Bacilli › Bacillales › Bacillaceae › Bacillus › Bacillus megaterium

Protein attributes

Sequence length	467 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. RuleBase RU000382
Sequence similarities	Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
Ligand	Pyridoxal phosphate RuleBase RU000382
Molecular function	Lyase RuleBase RU000382 EMBL ADF39290.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	glutamate metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	glutamate decarboxylase activity Inferred from electronic annotation. Source: EC pyridoxal phosphate binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5DEK8 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: 49F0BE982EB72805	FASTA	467	53,223
	10 20 30 40 50 60 MPQWHPHREQ KNLPDEFPVN PLFSRQGEVT IPRLRISDQG MLPETAYQII HDEIALDGNA 70 80 90 100 110 120 RLNLATFVTT WMEPDAKRLY GESFDKNMID KDEYPQTAAI EERCVRILAD LWNSPNPDTT 130 140 150 160 170 180 MGVSTTGSSE ACMLGGLALK RRWQKLRKSK GLSTERPNIV FSSSVQVVWE KFANYWDVEP 190 200 210 220 230 240 RYVNINADHP YLDPEGVIKA VDENTIGVVP ILGVTYTGVY EPIAAIAKAL DELQEKTGLD 250 260 270 280 290 300 IPIHIDAASG GFIAPFLQPD LIWDFRLPRV KSINVSGHKY GLVYPGLGWV IWREKEDLPE 310 320 330 340 350 360 DLIFRVSYLG GNMPTFALNF SRPGAQVLLQ YYNFLRLGKD GYYAVQKTSQ ENALFLSKEI 370 380 390 400 410 420 GEMEAFEIIA DGSDIPVLAW KLKEGYTPNW TLYDLSRQLR TYGWQVPAYP LPADMEEITI 430 440 450 460 MRIVVRNGFS RDLAHLFMVN FKQAVEFLNS LDRPVLKDTK YDNGFHH

References

[1]

"Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure." Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S. Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 319.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001982 Genomic DNA. Translation: ADF39290.1.
RefSeq	YP_003597640.1. NC_014103.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADF39290; ADF39290; BMD_2444.
GeneID	9117835.
KEGG	bmd:BMD_2444.
PATRIC	37254951. VBIBacMeg104484_2397.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000070228.
KO	K01580.
Enzyme and pathway databases
BioCyc	BMEG592022:GIVX-2444-MONOMER.
Family and domain databases
Gene3D	3.40.640.10. 1 hit.
InterPro	IPR010107. Glutamate_decarboxylase. IPR002129. PyrdxlP-dep_de-COase. IPR015424. PyrdxlP-dep_Trfase. IPR015421. PyrdxlP-dep_Trfase_major_sub1. [Graphical view]
PANTHER	PTHR11999:SF1. PTHR11999:SF1. 1 hit.
Pfam	PF00282. Pyridoxal_deC. 1 hit. [Graphical view]
SUPFAM	SSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMs	TIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D5DEK8_BACMD

Accession

Primary (citable) accession number: D5DEK8

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 19 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)