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D5DEK8 (D5DEK8_BACMD) Unreviewed, UniProtKB/TrEMBL

Last modified October 16, 2013. Version 20. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=4.1.1.15 EMBL ADF39290.1
Gene names
Ordered Locus Names:BMD_2444 EMBL ADF39290.1
OrganismBacillus megaterium (strain DSM 319) [Complete proteome] [HAMAP] EMBL ADF39290.1
Taxonomic identifier592022 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length467 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Sequences

Sequence LengthMass (Da)Tools
D5DEK8 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 49F0BE982EB72805

FASTA46753,223
        10         20         30         40         50         60 
MPQWHPHREQ KNLPDEFPVN PLFSRQGEVT IPRLRISDQG MLPETAYQII HDEIALDGNA 

        70         80         90        100        110        120 
RLNLATFVTT WMEPDAKRLY GESFDKNMID KDEYPQTAAI EERCVRILAD LWNSPNPDTT 

       130        140        150        160        170        180 
MGVSTTGSSE ACMLGGLALK RRWQKLRKSK GLSTERPNIV FSSSVQVVWE KFANYWDVEP 

       190        200        210        220        230        240 
RYVNINADHP YLDPEGVIKA VDENTIGVVP ILGVTYTGVY EPIAAIAKAL DELQEKTGLD 

       250        260        270        280        290        300 
IPIHIDAASG GFIAPFLQPD LIWDFRLPRV KSINVSGHKY GLVYPGLGWV IWREKEDLPE 

       310        320        330        340        350        360 
DLIFRVSYLG GNMPTFALNF SRPGAQVLLQ YYNFLRLGKD GYYAVQKTSQ ENALFLSKEI 

       370        380        390        400        410        420 
GEMEAFEIIA DGSDIPVLAW KLKEGYTPNW TLYDLSRQLR TYGWQVPAYP LPADMEEITI 

       430        440        450        460 
MRIVVRNGFS RDLAHLFMVN FKQAVEFLNS LDRPVLKDTK YDNGFHH 

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References

[1]"Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure."
Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 319.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001982 Genomic DNA. Translation: ADF39290.1.
RefSeqYP_003597640.1. NC_014103.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADF39290; ADF39290; BMD_2444.
GeneID9117835.
KEGGbmd:BMD_2444.
PATRIC37254951. VBIBacMeg104484_2397.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000070228.
KOK01580.
OMAIADLWNA.

Enzyme and pathway databases

BioCycBMEG592022:GIVX-2444-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
InterProIPR010107. Glutamate_decarboxylase.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
[Graphical view]
PANTHERPTHR11999:SF1. PTHR11999:SF1. 1 hit.
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. SSF53383. 1 hit.
TIGRFAMsTIGR01788. Glu-decarb-GAD. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5DEK8_BACMD
AccessionPrimary (citable) accession number: D5DEK8
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: October 16, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)