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D5D9Q3 (D5D9Q3_BACMD) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tuf HAMAP-Rule MF_00118 EMBL ADF37073.1
Ordered Locus Names:BMD_0132 EMBL ADF37073.1
OrganismBacillus megaterium (strain DSM 319) [Complete proteome] [HAMAP] EMBL ADF37073.1
Taxonomic identifier592022 [NCBI]
Taxonomic lineageBacteriaFirmicutesBacilliBacillalesBacillaceaeBacillus

Protein attributes

Sequence length396 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. HAMAP-Rule MF_00118 RuleBase RU000325

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. HAMAP-Rule MF_00118 RuleBase RU000325

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding82 – 865GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding137 – 1404GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D5D9Q3 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 229F8613129BD176

FASTA39643,263
        10         20         30         40         50         60 
MAKEKFDRSK THANIGTIGH VDHGKTTLTA AITTVLAKKS GKGAAMAYDM IDAAPEERER 

        70         80         90        100        110        120 
GITISTAHVE YETDTRHYAH VDCPGHADYV KNMITGAAQM DGGILVVSAA DGPMPQTREH 

       130        140        150        160        170        180 
ILLSRQVGVP YLVVFLNKCD MVDDEELLEL VEMEVRDLLS EYDFPGDDVP VIKGSALKAL 

       190        200        210        220        230        240 
EGEADWEAKI IELMDAVDEY IPTPERDTEK PFMMPVEDVF SITGRGTVAT GRVERGQVKV 

       250        260        270        280        290        300 
GDVIDIIGLT EEPKSTTVTG VEMFRKLLDY AEAGDNIGAL LRGVAREEIQ RGQVLAKPGS 

       310        320        330        340        350        360 
ITPHTKFTAE VYVLSKDEGG RHTPFFTNYR PQFYFRTTDV TGICNLPEGV EMVMPGDNIE 

       370        380        390 
MTVELIAPIA IEEGTKFSIR EGGRTVGAGV VAKISE 

« Hide

References

[1]"Genome sequences of the industrial vitamin B12-producers B. megaterium QM B1551 and DSM319 reveal new insights into the Bacillus genome evolution and pan-genome structure."
Eppinger M., Bunk B., Johns M.A., Edirisinghe J.N., Kutumbaka K.K., Riley D.R., Creasy H.H., Koenig S.S.K., Galens K., Orvis J., Creasy T., Biedendieck R., Braun C., Grayburn S., Jahn D., Ravel J., Vary P.S.
Submitted (FEB-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 319.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001982 Genomic DNA. Translation: ADF37073.1.
RefSeqYP_003595423.1. NC_014103.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADF37073; ADF37073; BMD_0132.
GeneID9115523.
KEGGbmd:BMD_0132.
PATRIC37250205. VBIBacMeg104484_0105.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMADNIEMVG.

Enzyme and pathway databases

BioCycBMEG592022:GIVX-132-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5D9Q3_BACMD
AccessionPrimary (citable) accession number: D5D9Q3
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: June 11, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)