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D5D3C4

- D5D3C4_ECOKI

UniProt

D5D3C4 - D5D3C4_ECOKI

Protein

Superoxide dismutase

Gene

sodB

Organism
Escherichia coli O18:K1:H7 (strain IHE3034 / ExPEC)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Destroys radicals which are normally produced within the cells and which are toxic to biological systems.UniRule annotation

    Catalytic activityi

    2 superoxide + 2 H+ = O2 + H2O2.

    GO - Molecular functioni

    1. metal ion binding Source: InterPro
    2. superoxide dismutase activity Source: UniProtKB-EC

    Keywords - Molecular functioni

    OxidoreductaseUniRule annotationImported

    Enzyme and pathway databases

    BioCyciECOL714962:GI9T-1775-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Superoxide dismutaseUniRule annotation (EC:1.15.1.1UniRule annotation)
    Gene namesi
    Name:sodBImported
    Ordered Locus Names:ECOK1_1775Imported
    OrganismiEscherichia coli O18:K1:H7 (strain IHE3034 / ExPEC)Imported
    Taxonomic identifieri714962 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaEnterobacterialesEnterobacteriaceaeEscherichia
    ProteomesiUP000002364: Chromosome

    PTM / Processingi

    Proteomic databases

    PRIDEiD5D3C4.

    Structurei

    3D structure databases

    ProteinModelPortaliD5D3C4.
    SMRiD5D3C4. Positions 2-193.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the iron/manganese superoxide dismutase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000013584.
    KOiK04564.

    Family and domain databases

    InterProiIPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view]
    PANTHERiPTHR11404. PTHR11404. 1 hit.
    PfamiPF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view]
    PIRSFiPIRSF000349. SODismutase. 1 hit.
    PRINTSiPR01703. MNSODISMTASE.
    SUPFAMiSSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEiPS00088. SOD_MN. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5D3C4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSFELPALPY AKDALAPHIS AETIEYHYGK HHQTYVTNLN NLIKGTAFEG    50
    KSLEEIIRSS EGGVFNNAAQ VWNHTFYWNC LAPNAGGEPT GKVAEAIAAS 100
    FGSFADFKAQ FTDAAIKNFG SGWTWLVKNS DGKLAIVSTS NAGTPLTTDA 150
    TPLLTVDVWE HAYYIDYRNA RPGYLEHFWA LVNWEFVAKN LAA 193
    Length:193
    Mass (Da):21,266
    Last modified:June 15, 2010 - v1
    Checksum:i91236D2A8FE61474
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001969 Genomic DNA. Translation: ADE88693.1.
    RefSeqiYP_006100963.1. NC_017628.1.

    Genome annotation databases

    EnsemblBacteriaiADE88693; ADE88693; ECOK1_1775.
    GeneIDi12690343.
    KEGGieih:ECOK1_1775.
    PATRICi36704958. VBIEscCol148715_1810.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001969 Genomic DNA. Translation: ADE88693.1 .
    RefSeqi YP_006100963.1. NC_017628.1.

    3D structure databases

    ProteinModelPortali D5D3C4.
    SMRi D5D3C4. Positions 2-193.
    ModBasei Search...
    MobiDBi Search...

    Proteomic databases

    PRIDEi D5D3C4.

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADE88693 ; ADE88693 ; ECOK1_1775 .
    GeneIDi 12690343.
    KEGGi eih:ECOK1_1775.
    PATRICi 36704958. VBIEscCol148715_1810.

    Phylogenomic databases

    HOGENOMi HOG000013584.
    KOi K04564.

    Enzyme and pathway databases

    BioCyci ECOL714962:GI9T-1775-MONOMER.

    Family and domain databases

    InterProi IPR001189. Mn/Fe_SOD.
    IPR019833. Mn/Fe_SOD_BS.
    IPR019832. Mn/Fe_SOD_C.
    IPR019831. Mn/Fe_SOD_N.
    [Graphical view ]
    PANTHERi PTHR11404. PTHR11404. 1 hit.
    Pfami PF02777. Sod_Fe_C. 1 hit.
    PF00081. Sod_Fe_N. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF000349. SODismutase. 1 hit.
    PRINTSi PR01703. MNSODISMTASE.
    SUPFAMi SSF46609. SSF46609. 1 hit.
    SSF54719. SSF54719. 1 hit.
    PROSITEi PS00088. SOD_MN. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IHE3034 / ExPECImported.
    2. "Identification of protective and broadly conserved vaccine antigens from the genome of Extraintestinal Pathogenic Escherichia coli (ExPEC)."
      Moriel D.G., Bertoldi I., Spagnuolo A., Marchi S., Rosini R., Nesta B., Pastorello I., Mariani Corea V.A., Torricelli G., Cartocci E., Savino S., Scarselli M., Dobrindt U., Hacker J., Tettelin H., Wieler L.H., Ewers C., Picard D.
      , Dougan G., Fontana M.R., Rappuoli R., Pizza M., Serino L.
      Proc. Natl. Acad. Sci. U.S.A. 0:0-0(2010)
      Cited for: NUCLEOTIDE SEQUENCE.
      Strain: IHE3034.

    Entry informationi

    Entry nameiD5D3C4_ECOKI
    AccessioniPrimary (citable) accession number: D5D3C4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteomeImported

    External Data

    Dasty 3