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D5C2B5 (D5C2B5_NITHN) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 18. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
Gene names
Ordered Locus Names:Nhal_1642 EMBL ADE14774.1
OrganismNitrosococcus halophilus (strain Nc4) [Complete proteome] [HAMAP] EMBL ADE14774.1
Taxonomic identifier472759 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus

Protein attributes

Sequence length379 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADE14774.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5C2B5 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 612EB163ECE42AB8

FASTA37943,580
        10         20         30         40         50         60 
MVGVERLVMQ KLDRTLKNSL HQAKAKGRLR RERFGDLVYH RLADDSRPLT RGTVIFEDGT 

        70         80         90        100        110        120 
LIPGYPQIGR VMRLDKGLKE QFRGSFWAEE KVDGYNVRIF LLGERLLGVT RGGFLCPFTV 

       130        140        150        160        170        180 
DRLPDLIDRR IFSEHPELTL CAEIAGPENP YLVGSPPFIQ EDIQLFVFDG QRKGELDYLS 

       190        200        210        220        230        240 
QTEKRQLIEH YHLPSVQNFG CFKAEDLSAI KQLMIRLNNE GREGLVFKED IPGGKQSKYV 

       250        260        270        280        290        300 
TSEASLSDIE AMTRYLQDLP PEYFIGRILR LVMFLDEEGI GNTRELKTQL GAAFVEGVFK 

       310        320        330        340        350        360 
AIEQCQRENR VYHRFRCRLR NRSNGRQLLA HLGRGDGHLQ IVEHRLEQEG EFYVLEFDKV 

       370 
FQRTTGLLGE LLSGGVVYD 

« Hide

References

[1]"Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium."
US DOE Joint Genome Institute
Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G.
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nc4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001798 Genomic DNA. Translation: ADE14774.1.
RefSeqYP_003527161.1. NC_013960.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADE14774; ADE14774; Nhal_1642.
GeneID8916630.
KEGGnhl:Nhal_1642.
PATRIC35393214. VBINitHal115488_1741.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000224394.
KOK07468.
OMACGEIAGP.

Enzyme and pathway databases

BioCycNHAL472759:GHH2-1666-MONOMER.

Family and domain databases

InterProIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSPR01048. Y414FAMILY.
TIGRFAMsTIGR01209. TIGR01209. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5C2B5_NITHN
AccessionPrimary (citable) accession number: D5C2B5
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 18 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)