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Protein
Submitted name:

ATP dependent DNA ligase

Gene

Nhal_1642

Organism
Nitrosococcus halophilus (strain Nc4)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Keywordsi

Molecular functionLigaseImported

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Nhal_1642Imported
OrganismiNitrosococcus halophilus (strain Nc4)Imported
Taxonomic identifieri472759 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
Proteomesi
  • UP000001844 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi472759.Nhal_1642

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini85 – 230RNA_ligaseInterPro annotationAdd BLAST146

Phylogenomic databases

eggNOGiENOG4105S3H Bacteria
COG1423 LUCA
HOGENOMiHOG000224394
KOiK07468
OMAiEEKMNGY
OrthoDBiPOG091H2928

Family and domain databases

CDDicd07894 Adenylation_RNA_ligase, 1 hit
InterProiView protein in InterPro
IPR021122 RNA_ligase_dom_REL/Rnl2
IPR001072 RNA_ligase_Pab1020
PfamiView protein in Pfam
PF09414 RNA_ligase, 1 hit
PRINTSiPR01048 Y414FAMILY
TIGRFAMsiTIGR01209 TIGR01209, 1 hit

Sequencei

Sequence statusi: Complete.

D5C2B5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MVGVERLVMQ KLDRTLKNSL HQAKAKGRLR RERFGDLVYH RLADDSRPLT
60 70 80 90 100
RGTVIFEDGT LIPGYPQIGR VMRLDKGLKE QFRGSFWAEE KVDGYNVRIF
110 120 130 140 150
LLGERLLGVT RGGFLCPFTV DRLPDLIDRR IFSEHPELTL CAEIAGPENP
160 170 180 190 200
YLVGSPPFIQ EDIQLFVFDG QRKGELDYLS QTEKRQLIEH YHLPSVQNFG
210 220 230 240 250
CFKAEDLSAI KQLMIRLNNE GREGLVFKED IPGGKQSKYV TSEASLSDIE
260 270 280 290 300
AMTRYLQDLP PEYFIGRILR LVMFLDEEGI GNTRELKTQL GAAFVEGVFK
310 320 330 340 350
AIEQCQRENR VYHRFRCRLR NRSNGRQLLA HLGRGDGHLQ IVEHRLEQEG
360 370
EFYVLEFDKV FQRTTGLLGE LLSGGVVYD
Length:379
Mass (Da):43,580
Last modified:June 15, 2010 - v1
Checksum:i612EB163ECE42AB8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001798 Genomic DNA Translation: ADE14774.1

Genome annotation databases

EnsemblBacteriaiADE14774; ADE14774; Nhal_1642
KEGGinhl:Nhal_1642

Similar proteinsi

Entry informationi

Entry nameiD5C2B5_NITHN
AccessioniPrimary (citable) accession number: D5C2B5
Entry historyiIntegrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: March 28, 2018
This is version 42 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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