D5C2B5 (D5C2B5_NITHN) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP dependent DNA ligase EMBL ADE14774.1

Gene names

Ordered Locus Names:

Nhal_1642 EMBL ADE14774.1

Organism

Nitrosococcus halophilus (strain Nc4) [Complete proteome] [HAMAP] EMBL ADE14774.1

Taxonomic identifier

472759 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Gammaproteobacteria › Chromatiales › Chromatiaceae › Nitrosococcus › Nitrosococcus halophilus

Protein attributes

Sequence length	379 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADE14774.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5C2B5 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: 612EB163ECE42AB8	FASTA	379	43,580
	10 20 30 40 50 60 MVGVERLVMQ KLDRTLKNSL HQAKAKGRLR RERFGDLVYH RLADDSRPLT RGTVIFEDGT 70 80 90 100 110 120 LIPGYPQIGR VMRLDKGLKE QFRGSFWAEE KVDGYNVRIF LLGERLLGVT RGGFLCPFTV 130 140 150 160 170 180 DRLPDLIDRR IFSEHPELTL CAEIAGPENP YLVGSPPFIQ EDIQLFVFDG QRKGELDYLS 190 200 210 220 230 240 QTEKRQLIEH YHLPSVQNFG CFKAEDLSAI KQLMIRLNNE GREGLVFKED IPGGKQSKYV 250 260 270 280 290 300 TSEASLSDIE AMTRYLQDLP PEYFIGRILR LVMFLDEEGI GNTRELKTQL GAAFVEGVFK 310 320 330 340 350 360 AIEQCQRENR VYHRFRCRLR NRSNGRQLLA HLGRGDGHLQ IVEHRLEQEG EFYVLEFDKV 370 FQRTTGLLGE LLSGGVVYD

References

[1]

"Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium." US DOE Joint Genome Institute Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G. Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Nc4.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001798 Genomic DNA. Translation: ADE14774.1.
RefSeq	YP_003527161.1. NC_013960.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADE14774; ADE14774; Nhal_1642.
GeneID	8916630.
KEGG	nhl:Nhal_1642.
PATRIC	35393214. VBINitHal115488_1741.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000224394.
KO	K07468.
Enzyme and pathway databases
BioCyc	NHAL472759:GHH2-1666-MONOMER.
Family and domain databases
InterPro	IPR012310. DNA_ligase_ATP-dep_cent. IPR001072. Uncharacterised_MJ0414. [Graphical view]
Pfam	PF01068. DNA_ligase_A_M. 1 hit. [Graphical view]
PRINTS	PR01048. Y414FAMILY.
TIGRFAMs	TIGR01209. TIGR01209. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D5C2B5_NITHN

Accession

Primary (citable) accession number: D5C2B5

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 15 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)