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D5C2B5

- D5C2B5_NITHN

UniProt

D5C2B5 - D5C2B5_NITHN

Protein
Submitted name:

ATP dependent DNA ligase

Gene

Nhal_1642

Organism
Nitrosococcus halophilus (strain Nc4)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 20 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciNHAL472759:GHH2-1666-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:Nhal_1642Imported
    OrganismiNitrosococcus halophilus (strain Nc4)Imported
    Taxonomic identifieri472759 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
    ProteomesiUP000001844: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000224394.
    KOiK07468.
    OMAiCGEIAGP.

    Family and domain databases

    InterProiIPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view]
    PfamiPF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view]
    PRINTSiPR01048. Y414FAMILY.
    TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D5C2B5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MVGVERLVMQ KLDRTLKNSL HQAKAKGRLR RERFGDLVYH RLADDSRPLT    50
    RGTVIFEDGT LIPGYPQIGR VMRLDKGLKE QFRGSFWAEE KVDGYNVRIF 100
    LLGERLLGVT RGGFLCPFTV DRLPDLIDRR IFSEHPELTL CAEIAGPENP 150
    YLVGSPPFIQ EDIQLFVFDG QRKGELDYLS QTEKRQLIEH YHLPSVQNFG 200
    CFKAEDLSAI KQLMIRLNNE GREGLVFKED IPGGKQSKYV TSEASLSDIE 250
    AMTRYLQDLP PEYFIGRILR LVMFLDEEGI GNTRELKTQL GAAFVEGVFK 300
    AIEQCQRENR VYHRFRCRLR NRSNGRQLLA HLGRGDGHLQ IVEHRLEQEG 350
    EFYVLEFDKV FQRTTGLLGE LLSGGVVYD 379
    Length:379
    Mass (Da):43,580
    Last modified:June 15, 2010 - v1
    Checksum:i612EB163ECE42AB8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001798 Genomic DNA. Translation: ADE14774.1.
    RefSeqiWP_013032661.1. NC_013960.1.
    YP_003527161.1. NC_013960.1.

    Genome annotation databases

    EnsemblBacteriaiADE14774; ADE14774; Nhal_1642.
    GeneIDi8916630.
    KEGGinhl:Nhal_1642.
    PATRICi35393214. VBINitHal115488_1741.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001798 Genomic DNA. Translation: ADE14774.1 .
    RefSeqi WP_013032661.1. NC_013960.1.
    YP_003527161.1. NC_013960.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADE14774 ; ADE14774 ; Nhal_1642 .
    GeneIDi 8916630.
    KEGGi nhl:Nhal_1642.
    PATRICi 35393214. VBINitHal115488_1741.

    Phylogenomic databases

    HOGENOMi HOG000224394.
    KOi K07468.
    OMAi CGEIAGP.

    Enzyme and pathway databases

    BioCyci NHAL472759:GHH2-1666-MONOMER.

    Family and domain databases

    InterProi IPR012310. DNA_ligase_ATP-dep_cent.
    IPR001072. Uncharacterised_MJ0414.
    [Graphical view ]
    Pfami PF01068. DNA_ligase_A_M. 1 hit.
    [Graphical view ]
    PRINTSi PR01048. Y414FAMILY.
    TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium."
      US DOE Joint Genome Institute
      Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G.
      Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Nc4Imported.

    Entry informationi

    Entry nameiD5C2B5_NITHN
    AccessioniPrimary (citable) accession number: D5C2B5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 20 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3