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D5C2B5

- D5C2B5_NITHN

UniProt

D5C2B5 - D5C2B5_NITHN

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Protein
Submitted name: ATP dependent DNA ligase
Gene
Nhal_1642
Organism
Nitrosococcus halophilus (strain Nc4)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: InterPro
Complete GO annotation...

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciNHAL472759:GHH2-1666-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:Nhal_1642Imported
OrganismiNitrosococcus halophilus (strain Nc4)Imported
Taxonomic identifieri472759 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
ProteomesiUP000001844: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000224394.
KOiK07468.
OMAiCGEIAGP.

Family and domain databases

InterProiIPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view]
PfamiPF01068. DNA_ligase_A_M. 1 hit.
[Graphical view]
PRINTSiPR01048. Y414FAMILY.
TIGRFAMsiTIGR01209. TIGR01209. 1 hit.

Sequencei

Sequence statusi: Complete.

D5C2B5-1 [UniParc]FASTAAdd to Basket

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MVGVERLVMQ KLDRTLKNSL HQAKAKGRLR RERFGDLVYH RLADDSRPLT    50
RGTVIFEDGT LIPGYPQIGR VMRLDKGLKE QFRGSFWAEE KVDGYNVRIF 100
LLGERLLGVT RGGFLCPFTV DRLPDLIDRR IFSEHPELTL CAEIAGPENP 150
YLVGSPPFIQ EDIQLFVFDG QRKGELDYLS QTEKRQLIEH YHLPSVQNFG 200
CFKAEDLSAI KQLMIRLNNE GREGLVFKED IPGGKQSKYV TSEASLSDIE 250
AMTRYLQDLP PEYFIGRILR LVMFLDEEGI GNTRELKTQL GAAFVEGVFK 300
AIEQCQRENR VYHRFRCRLR NRSNGRQLLA HLGRGDGHLQ IVEHRLEQEG 350
EFYVLEFDKV FQRTTGLLGE LLSGGVVYD 379
Length:379
Mass (Da):43,580
Last modified:June 15, 2010 - v1
Checksum:i612EB163ECE42AB8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001798 Genomic DNA. Translation: ADE14774.1.
RefSeqiWP_013032661.1. NC_013960.1.
YP_003527161.1. NC_013960.1.

Genome annotation databases

EnsemblBacteriaiADE14774; ADE14774; Nhal_1642.
GeneIDi8916630.
KEGGinhl:Nhal_1642.
PATRICi35393214. VBINitHal115488_1741.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001798 Genomic DNA. Translation: ADE14774.1 .
RefSeqi WP_013032661.1. NC_013960.1.
YP_003527161.1. NC_013960.1.

3D structure databases

ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADE14774 ; ADE14774 ; Nhal_1642 .
GeneIDi 8916630.
KEGGi nhl:Nhal_1642.
PATRICi 35393214. VBINitHal115488_1741.

Phylogenomic databases

HOGENOMi HOG000224394.
KOi K07468.
OMAi CGEIAGP.

Enzyme and pathway databases

BioCyci NHAL472759:GHH2-1666-MONOMER.

Family and domain databases

InterProi IPR012310. DNA_ligase_ATP-dep_cent.
IPR001072. Uncharacterised_MJ0414.
[Graphical view ]
Pfami PF01068. DNA_ligase_A_M. 1 hit.
[Graphical view ]
PRINTSi PR01048. Y414FAMILY.
TIGRFAMsi TIGR01209. TIGR01209. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium."
    US DOE Joint Genome Institute
    Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nc4.

Entry informationi

Entry nameiD5C2B5_NITHN
AccessioniPrimary (citable) accession number: D5C2B5
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: September 3, 2014
This is version 19 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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