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Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene

Nhal_3442

Organism
Nitrosococcus halophilus (strain Nc4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciNHAL472759:GHH2-3489-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:Nhal_3442Imported
OrganismiNitrosococcus halophilus (strain Nc4)Imported
Taxonomic identifieri472759 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
Proteomesi
  • UP000001844 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi472759.Nhal_3442.

Structurei

3D structure databases

ProteinModelPortaliD5C1B7.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini26 – 152127RuBisCO_large_NInterPro annotationAdd
BLAST
Domaini162 – 469308RuBisCO_largeInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiQACDAYL.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5C1B7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKSETMAEG KERYKSGVIP YKKMGYWEPD YKPKETDIIA MFRITPQAGV
60 70 80 90 100
DPAEAAAAVA GESSTATWTV VWTDRLTACE LYRAKAYRVD PVPNTGEGTK
110 120 130 140 150
TEAQYFAYIA YDLDLFEPGS IANLTASIIG NVFGFKAVKA LRLEDMHIPV
160 170 180 190 200
AYLKTFQGPA TGVIVERERL DKFGRPLLGA TTKPKLGLSG RNYGRVVYEA
210 220 230 240 250
LKGGLDFVKD DENINSQPFM HWRDRFLYCM EAVNKASAAT GEVKGHYLNV
260 270 280 290 300
TAATMEDMYE RAEFAKSLGS VIIMIDLVVG YTAIQSMAKW ARKNDMVLHL
310 320 330 340 350
HRAGNSTYSR QKNHGMNFRV ICKWMRMAGV DHIHAGTVVG KLEGDPLMIK
360 370 380 390 400
GFYDTLRERH TPTSLEHGLF FDQDWASLNK VMPVASGGIH AGQMHQLLHY
410 420 430 440 450
LGEDVVLQFG GGTIGHPQGI QAGATANRVA LEAMIMARNE GRDYMKEGPQ
460 470 480 490
ILEDAAKWCS PLKAALDTWK DITFNYESTD TADFVPTATT SV
Length:492
Mass (Da):54,513
Last modified:June 15, 2010 - v1
Checksum:i5620AFFE070F1BAB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001798 Genomic DNA. Translation: ADE16469.1.
RefSeqiWP_013034318.1. NC_013960.1.

Genome annotation databases

EnsemblBacteriaiADE16469; ADE16469; Nhal_3442.
KEGGinhl:Nhal_3442.
PATRICi35397002. VBINitHal115488_3612.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001798 Genomic DNA. Translation: ADE16469.1.
RefSeqiWP_013034318.1. NC_013960.1.

3D structure databases

ProteinModelPortaliD5C1B7.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi472759.Nhal_3442.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADE16469; ADE16469; Nhal_3442.
KEGGinhl:Nhal_3442.
PATRICi35397002. VBINitHal115488_3612.

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiQACDAYL.

Enzyme and pathway databases

BioCyciNHAL472759:GHH2-3489-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium."
    US DOE Joint Genome Institute
    Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nc4Imported.

Entry informationi

Entry nameiD5C1B7_NITHN
AccessioniPrimary (citable) accession number: D5C1B7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 13, 2016
This is version 41 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.