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Protein
Submitted name:

Ribulose-bisphosphate carboxylase

Gene

Nhal_3435

Organism
Nitrosococcus halophilus (strain Nc4)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseImported

Enzyme and pathway databases

BioCyciNHAL472759:GHH2-3482-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Ribulose-bisphosphate carboxylaseImported (EC:4.1.1.39Imported)
Gene namesi
Ordered Locus Names:Nhal_3435Imported
OrganismiNitrosococcus halophilus (strain Nc4)Imported
Taxonomic identifieri472759 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus
Proteomesi
  • UP000001844 Componenti: Chromosome

Interactioni

Protein-protein interaction databases

STRINGi472759.Nhal_3435.

Structurei

3D structure databases

ProteinModelPortaliD5C1B2.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Domaini17 – 137121RuBisCO_large_NInterPro annotationAdd
BLAST
Domaini147 – 455309RuBisCO_largeInterPro annotationAdd
BLAST

Sequence similaritiesi

Belongs to the RuBisCO large chain family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiHVHRAMH.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5C1B2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAKKTYTAGV KEYRETYWMP EYTPADTDIL ACFKVTPQPG VPREEAAAAV
60 70 80 90 100
AAESSTGTWT TVWTDLLTDL DYYKGRAYAI EDVPGDDESF YAFIAYPIDL
110 120 130 140 150
FEEGSVVNVF TSLVGNVFGF KALRALRLED VRFPIAYVKT CGGPPNGIQV
160 170 180 190 200
ERDKMDKYGR PLLGCTIKPK LGLSAKNYGR AVYECLRGGL DFTKDDENVN
210 220 230 240 250
SQPFMRWRQR FEFVMEAIHK AEAETGERKG HYLNVTAPTP EEMYKRAEFA
260 270 280 290 300
KELKAPIIMH DYITGGFCAN TGLANWCRDN GMLLHIHRAM HAVLDRHPKH
310 320 330 340 350
GIHFRVLAKI LRLSGGDHLH SGTVVGKLEG DRAATLGWID IMRDKFIKED
360 370 380 390 400
RSRGIFFDQD WGSMPGVFPV ASGGIHVWHM PALTAIFGDD SVLQFGGGTL
410 420 430 440 450
GHPWGNAAGA AANRVSLEAC VEARNQGRPI EKEGKEILTT AAKNSPELKV
460 470
AMETWKEIKF EFDTVDKLDV AHK
Length:473
Mass (Da):52,734
Last modified:June 15, 2010 - v1
Checksum:iA2718D3E53AC8B3D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001798 Genomic DNA. Translation: ADE16464.1.
RefSeqiWP_013034313.1. NC_013960.1.

Genome annotation databases

EnsemblBacteriaiADE16464; ADE16464; Nhal_3435.
KEGGinhl:Nhal_3435.
PATRICi35396988. VBINitHal115488_3605.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001798 Genomic DNA. Translation: ADE16464.1.
RefSeqiWP_013034313.1. NC_013960.1.

3D structure databases

ProteinModelPortaliD5C1B2.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi472759.Nhal_3435.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADE16464; ADE16464; Nhal_3435.
KEGGinhl:Nhal_3435.
PATRICi35396988. VBINitHal115488_3605.

Phylogenomic databases

eggNOGiENOG4105DT1. Bacteria.
COG1850. LUCA.
HOGENOMiHOG000230831.
KOiK01601.
OMAiHVHRAMH.

Enzyme and pathway databases

BioCyciNHAL472759:GHH2-3482-MONOMER.

Family and domain databases

Gene3Di3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
HAMAPiMF_01338. RuBisCO_L_type1.
InterProiIPR020878. RuBisCo_large_chain_AS.
IPR020888. RuBisCO_lsu.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
[Graphical view]
PfamiPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMiSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
PROSITEiPS00157. RUBISCO_LARGE. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium."
    US DOE Joint Genome Institute
    Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G.
    Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Nc4Imported.

Entry informationi

Entry nameiD5C1B2_NITHN
AccessioniPrimary (citable) accession number: D5C1B2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 13, 2016
This is version 43 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.