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D5BW20 (D5BW20_NITHN) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=2.4.1.129 EMBL ADE13670.1
Gene names
Ordered Locus Names:Nhal_0484 EMBL ADE13670.1
OrganismNitrosococcus halophilus (strain Nc4) [Complete proteome] [HAMAP] EMBL ADE13670.1
Taxonomic identifier472759 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaChromatialesChromatiaceaeNitrosococcus

Protein attributes

Sequence length567 AA.
Sequence statusComplete.
Sequence processingThe displayed sequence is further processed into a mature form.
Protein existencePredicted

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Molecule processing

Signal peptide1 – 2929 Potential EMBL ADE13670.1
Chain30 – 567538 Potential EMBL ADE13670.1
PRO_5000582066

Sequences

Sequence LengthMass (Da)Tools
D5BW20 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 1934DD9C5B8EF229

FASTA56762,233
        10         20         30         40         50         60 
MSRGRNKGYP ARLGVVGLVF AVAAVGLAWR LVELQVFNRD FLRGEGEARH LRVVEVPAHR 

        70         80         90        100        110        120 
GMITDRHGEP LAVSTPVASV WFNPQLLREA RERWPALAKA VGVSTAYLSR RIKEGGEREF 

       130        140        150        160        170        180 
VYLKRWVEPN VARQVQALDI PGVNLQSEYR RYYPAGSVAA HVVGFTNIDD RGQEGLELAF 

       190        200        210        220        230        240 
DKTLQGVPGK KRVIRDSRGR VVEDVENLRV PRPGQDLRLS IDLRLQYLAY RELKAAVRTH 

       250        260        270        280        290        300 
NARAGSLVIL DVDTGEVLAM VNRPSYNPND RSQLKSHLYR NRAVTDLFEP GSTIKPFTIG 

       310        320        330        340        350        360 
VALESGKYHP HTPIDTTPGY FRVGRHVIRD IRNYGRVDVS TVIKKSSNVG ASKIALSLDS 

       370        380        390        400        410        420 
QRLWQGFAQA GLGASTASGF PGEAEGHLPD PFSFRQIEQA TLAFGYGLSV TTLQLARAYA 

       430        440        450        460        470        480 
ALGAGGELKP VSFLHREQAA GGRQVWSEST VSALLSMLEE VVSEGGTGER AHVPSYRVAG 

       490        500        510        520        530        540 
KTGTVKKAIR GGYADERYVS LFAGLIPASR PRLAAVVLID EPQGKIYYGG QVAAPVFSRV 

       550        560 
MVGAMRLLNI APDNLHPLRL AERENRG 

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References

[1]"Complete genome sequence of Nitrosococcus halophilus Nc4, a salt-adapted, aerobic obligate ammonia-oxidizing sulfur purple bacterium."
US DOE Joint Genome Institute
Campbell M.A., Malfatti S.A., Chain P.S.G., Heidelberg J.F., Ward B.B., Klotz M.G.
Submitted (APR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Nc4.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001798 Genomic DNA. Translation: ADE13670.1.
RefSeqYP_003526057.1. NC_013960.1.

3D structure databases

ProteinModelPortalD5BW20.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADE13670; ADE13670; Nhal_0484.
GeneID8915454.
KEGGnhl:Nhal_0484.
PATRIC35390834. VBINitHal115488_0568.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000049554.
KOK03587.

Enzyme and pathway databases

BioCycNHAL472759:GHH2-490-MONOMER.

Family and domain databases

Gene3D3.40.710.10. 1 hit.
InterProIPR012338. Beta-lactam/transpept-like.
IPR005311. PBP_dimer.
IPR001460. PCN-bd_Tpept.
[Graphical view]
PfamPF03717. PBP_dimer. 1 hit.
PF00905. Transpeptidase. 1 hit.
[Graphical view]
SUPFAMSSF56519. SSF56519. 1 hit.
SSF56601. SSF56601. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5BW20_NITHN
AccessionPrimary (citable) accession number: D5BW20
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 16, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)