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D5BRJ2 (D5BRJ2_PUNMI) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length383 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS001608

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site481Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2781Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1511Substrate By similarity HAMAP-Rule MF_01201
Binding site3261Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue481N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D5BRJ2 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: C94F1188C70B9228

FASTA38342,040
        10         20         30         40         50         60 
MSTGDENVLA AFGAADNRID IDLGAIAHNW LYLDSLSPKS TITAAMVKAN GYGLGANHVG 

        70         80         90        100        110        120 
AALYKAGCRQ FFVANLDEAV SFRTYLDNIS ISDAQIMVLH GCHRGQEHDM RAYRLTPVLN 

       130        140        150        160        170        180 
DLEQVSRWRL YAQNANETYP AMLHLDTGMT RLGFDPDQTD WLIENKQALN GLEITYIMSH 

       190        200        210        220        230        240 
LISGEISDDP ANTAQKTRFD EYRSFFGGIK ASLANSGGVF LGNEFHYQMT RPGIAIYGVH 

       250        260        270        280        290        300 
PCGKDQAITD SNGLKSCITW HGRIIQVRTA PEGATVGYGG THRLSRPSRI ATVGVGYADG 

       310        320        330        340        350        360 
YQRNLSNKAF VNILGHRAPV IGRISMDSIT IDVTDIPPNI MLKAETAALL SDLYSIEDMA 

       370        380 
NDASTIPYEI LTGISRRAIR RYI 

« Hide

References

[1]"Complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria."
Oh H.M., Kwon K.K., Kang I., Kang S.G., Lee J.H., Kim S.J., Cho J.C.
J. Bacteriol. 192:3240-3241(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: IMCC1322 EMBL ADE38889.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001751 Genomic DNA. Translation: ADE38889.1.
RefSeqYP_003550973.1. NC_014010.1.

3D structure databases

ProteinModelPortalD5BRJ2.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADE38889; ADE38889; SAR116_0646.
GeneID8960974.
KEGGapb:SAR116_0646.
PATRIC35448201. VBIAlpPro78664_0646.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000031445.
KOK01775.
OMAFIMSHLA.

Enzyme and pathway databases

BioCycPMAR488538:GI1I-659-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5BRJ2_PUNMI
AccessionPrimary (citable) accession number: D5BRJ2
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: July 9, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)