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D5BRJ2

- D5BRJ2_PUNMI

UniProt

D5BRJ2 - D5BRJ2_PUNMI

Protein

Alanine racemase

Gene

SAR116_0646

Organism
Puniceispirillum marinum (strain IMCC1322)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 35 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids.UniRule annotation

    Catalytic activityi

    L-alanine = D-alanine.UniRule annotation

    Cofactori

    Pyridoxal phosphate.UniRule annotationSAAS annotation

    Pathwayi

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei48 – 481Proton acceptor; specific for D-alanineUniRule annotation
    Binding sitei151 – 1511SubstrateUniRule annotation
    Active sitei278 – 2781Proton acceptor; specific for L-alanineUniRule annotation
    Binding sitei326 – 3261Substrate; via amide nitrogenUniRule annotation

    GO - Molecular functioni

    1. alanine racemase activity Source: UniProtKB-HAMAP
    2. pyridoxal phosphate binding Source: UniProtKB-HAMAP

    GO - Biological processi

    1. D-alanine biosynthetic process Source: UniProtKB-UniPathway

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotationImported

    Keywords - Ligandi

    Pyridoxal phosphateUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciPMAR488538:GI1I-659-MONOMER.
    UniPathwayiUPA00042; UER00497.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    Alanine racemaseUniRule annotation (EC:5.1.1.1UniRule annotation)
    Gene namesi
    Ordered Locus Names:SAR116_0646Imported
    OrganismiPuniceispirillum marinum (strain IMCC1322)Imported
    Taxonomic identifieri488538 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSAR116 clusterCandidatus Puniceispirillum
    ProteomesiUP000007460: Chromosome

    PTM / Processingi

    Amino acid modifications

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Modified residuei48 – 481N6-(pyridoxal phosphate)lysineUniRule annotation

    Structurei

    3D structure databases

    ProteinModelPortaliD5BRJ2.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the alanine racemase family.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000031445.
    KOiK01775.
    OMAiFIMSHLA.

    Family and domain databases

    Gene3Di2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPiMF_01201. Ala_racemase.
    InterProiIPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view]
    PfamiPF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view]
    PRINTSiPR00992. ALARACEMASE.
    SMARTiSM01005. Ala_racemase_C. 1 hit.
    [Graphical view]
    SUPFAMiSSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsiTIGR00492. alr. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D5BRJ2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MSTGDENVLA AFGAADNRID IDLGAIAHNW LYLDSLSPKS TITAAMVKAN    50
    GYGLGANHVG AALYKAGCRQ FFVANLDEAV SFRTYLDNIS ISDAQIMVLH 100
    GCHRGQEHDM RAYRLTPVLN DLEQVSRWRL YAQNANETYP AMLHLDTGMT 150
    RLGFDPDQTD WLIENKQALN GLEITYIMSH LISGEISDDP ANTAQKTRFD 200
    EYRSFFGGIK ASLANSGGVF LGNEFHYQMT RPGIAIYGVH PCGKDQAITD 250
    SNGLKSCITW HGRIIQVRTA PEGATVGYGG THRLSRPSRI ATVGVGYADG 300
    YQRNLSNKAF VNILGHRAPV IGRISMDSIT IDVTDIPPNI MLKAETAALL 350
    SDLYSIEDMA NDASTIPYEI LTGISRRAIR RYI 383
    Length:383
    Mass (Da):42,040
    Last modified:June 15, 2010 - v1
    Checksum:iC94F1188C70B9228
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001751 Genomic DNA. Translation: ADE38889.1.
    RefSeqiYP_003550973.1. NC_014010.1.

    Genome annotation databases

    EnsemblBacteriaiADE38889; ADE38889; SAR116_0646.
    GeneIDi8960974.
    KEGGiapb:SAR116_0646.
    PATRICi35448201. VBIAlpPro78664_0646.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001751 Genomic DNA. Translation: ADE38889.1 .
    RefSeqi YP_003550973.1. NC_014010.1.

    3D structure databases

    ProteinModelPortali D5BRJ2.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADE38889 ; ADE38889 ; SAR116_0646 .
    GeneIDi 8960974.
    KEGGi apb:SAR116_0646.
    PATRICi 35448201. VBIAlpPro78664_0646.

    Phylogenomic databases

    HOGENOMi HOG000031445.
    KOi K01775.
    OMAi FIMSHLA.

    Enzyme and pathway databases

    UniPathwayi UPA00042 ; UER00497 .
    BioCyci PMAR488538:GI1I-659-MONOMER.

    Family and domain databases

    Gene3Di 2.40.37.10. 1 hit.
    3.20.20.10. 1 hit.
    HAMAPi MF_01201. Ala_racemase.
    InterProi IPR000821. Ala_racemase.
    IPR009006. Ala_racemase/Decarboxylase_C.
    IPR011079. Ala_racemase_C.
    IPR001608. Ala_racemase_N.
    IPR029066. PLP-binding_barrel.
    [Graphical view ]
    Pfami PF00842. Ala_racemase_C. 1 hit.
    PF01168. Ala_racemase_N. 1 hit.
    [Graphical view ]
    PRINTSi PR00992. ALARACEMASE.
    SMARTi SM01005. Ala_racemase_C. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50621. SSF50621. 1 hit.
    SSF51419. SSF51419. 1 hit.
    TIGRFAMsi TIGR00492. alr. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria."
      Oh H.M., Kwon K.K., Kang I., Kang S.G., Lee J.H., Kim S.J., Cho J.C.
      J. Bacteriol. 192:3240-3241(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: IMCC1322Imported.

    Entry informationi

    Entry nameiD5BRJ2_PUNMI
    AccessioniPrimary (citable) accession number: D5BRJ2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 35 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3