D5BRJ2 (D5BRJ2_PUNMI) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADE38889.1
EC=5.1.1.1 EMBL ADE38889.1

Gene names

Ordered Locus Names:

SAR116_0646 EMBL ADE38889.1

Organism

Puniceispirillum marinum (strain IMCC1322) [Complete proteome] [HAMAP] EMBL ADE38889.1

Taxonomic identifier

488538 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Proteobacteria › Alphaproteobacteria › unclassified Alphaproteobacteria › SAR116 cluster › Candidatus Puniceispirillum › Candidatus Puniceispirillum marinum

Protein attributes

Sequence length	383 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS011079
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079 EMBL ADE38889.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: EC
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5BRJ2 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: C94F1188C70B9228	FASTA	383	42,040
	10 20 30 40 50 60 MSTGDENVLA AFGAADNRID IDLGAIAHNW LYLDSLSPKS TITAAMVKAN GYGLGANHVG 70 80 90 100 110 120 AALYKAGCRQ FFVANLDEAV SFRTYLDNIS ISDAQIMVLH GCHRGQEHDM RAYRLTPVLN 130 140 150 160 170 180 DLEQVSRWRL YAQNANETYP AMLHLDTGMT RLGFDPDQTD WLIENKQALN GLEITYIMSH 190 200 210 220 230 240 LISGEISDDP ANTAQKTRFD EYRSFFGGIK ASLANSGGVF LGNEFHYQMT RPGIAIYGVH 250 260 270 280 290 300 PCGKDQAITD SNGLKSCITW HGRIIQVRTA PEGATVGYGG THRLSRPSRI ATVGVGYADG 310 320 330 340 350 360 YQRNLSNKAF VNILGHRAPV IGRISMDSIT IDVTDIPPNI MLKAETAALL SDLYSIEDMA 370 380 NDASTIPYEI LTGISRRAIR RYI

References

[1]

"Complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria." Oh H.M., Kwon K.K., Kang I., Kang S.G., Lee J.H., Kim S.J., Cho J.C. J. Bacteriol. 192:3240-3241(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: IMCC1322 EMBL ADE38889.1.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001751 Genomic DNA. Translation: ADE38889.1.
RefSeq	YP_003550973.1. NC_014010.1.
3D structure databases
ProteinModelPortal	D5BRJ2.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADE38889; ADE38889; SAR116_0646.
GeneID	8960974.
KEGG	apb:SAR116_0646.
PATRIC	35448201. VBIAlpPro78664_0646.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031445.
KO	K01775.
OMA	GHKLPIV.
Enzyme and pathway databases
BioCyc	PMAR488538:GI1I-646-MONOMER.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D5BRJ2_PUNMI

Accession

Primary (citable) accession number: D5BRJ2

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)