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D5BEV1

- D5BEV1_ZUNPS

UniProt

D5BEV1 - D5BEV1_ZUNPS

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ZPR_0472

Organism
Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciZPRO655815:GI6J-472-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported
    Gene namesi
    Ordered Locus Names:ZPR_0472Imported
    OrganismiZunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)Imported
    Taxonomic identifieri655815 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZunongwangia
    ProteomesiUP000001654: Chromosome

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000036007.
    KOiK01971.
    OMAiNRHKSGV.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D5BEV1-1 [UniParc]FASTAAdd to Basket

    « Hide

    MRQFAELIKT LDSTNKTTLK VEALTKYFNN APDRDKVWTI AILSHRRPPR    50
    PVNTTLMRLW ASEIANIPLW LFEESYHIVG DLAETIALVI PPSSASSEKS 100
    LSQFLQEIID LKPKSEEEKK EYLKENWLSL NYYERFVFTK LITGSFRIGV 150
    SQKLMTRALS KATDIDEDIL AYKMMGDWNA AKTTYTKLIL EENEEDFLSK 200
    PYPFYLAYAI EDQPEDLGDV NQWSAEHKWD GIRSQVIIRN NELFVWSRGE 250
    ELVTDKYPEF EKFVGVIPNG TVIDGEILPF PKGEIGTFKD LQTRIGRKTV 300
    SKNLLKKTPV ILKAYDVLEW HGEDIRQKAF KDRRAILEKL YTEVKSDGLP 350
    LHLSYTIQFK SWEEAAEERE RSREVKSEGL MLKRLDSPYL VGRKKGDWWK 400
    WKVDPLTIDA VLTYAMRGHG RRSNLFTDYT FGLWDEKKEE LVTFAKAYSG 450
    LTDAEFRKLD AWIKKNTLER FGPVRSVTPH HVFEVAFEGI AESKRHKSGV 500
    ATRFPRILRW RTDKKIEEAN TLEDLKALIP 530
    Length:530
    Mass (Da):61,647
    Last modified:June 15, 2010 - v1
    Checksum:i778D9F5D36FD821F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001650 Genomic DNA. Translation: ADF50830.1.
    RefSeqiYP_003583026.1. NC_014041.1.

    Genome annotation databases

    EnsemblBacteriaiADF50830; ADF50830; ZPR_0472.
    GeneIDi9076348.
    KEGGizpr:ZPR_0472.
    PATRICi37230429. VBIZunPro130839_0459.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001650 Genomic DNA. Translation: ADF50830.1 .
    RefSeqi YP_003583026.1. NC_014041.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADF50830 ; ADF50830 ; ZPR_0472 .
    GeneIDi 9076348.
    KEGGi zpr:ZPR_0472.
    PATRICi 37230429. VBIZunPro130839_0459.

    Phylogenomic databases

    HOGENOMi HOG000036007.
    KOi K01971.
    OMAi NRHKSGV.

    Enzyme and pathway databases

    BioCyci ZPRO655815:GI6J-472-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
      Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
      BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 18752 / CCTCC AB 206139 / SM-A87Imported.

    Entry informationi

    Entry nameiD5BEV1_ZUNPS
    AccessioniPrimary (citable) accession number: D5BEV1
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3