D5BEV1 (D5BEV1_ZUNPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
ATP-dependent DNA ligase EMBL ADF50830.1

Gene names

Ordered Locus Names:

ZPR_0472

Organism

Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) [Complete proteome] [HAMAP]

Taxonomic identifier

655815 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Zunongwangia › Zunongwangia profunda

Protein attributes

Sequence length	530 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Molecular function	Ligase EMBL ADF50830.1
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	DNA recombination Inferred from electronic annotation. Source: InterPro DNA repair Inferred from electronic annotation. Source: InterPro
Molecular_function	ATP binding Inferred from electronic annotation. Source: InterPro DNA binding Inferred from electronic annotation. Source: InterPro DNA ligase (ATP) activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5BEV1 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: 778D9F5D36FD821F	FASTA	530	61,647
	10 20 30 40 50 60 MRQFAELIKT LDSTNKTTLK VEALTKYFNN APDRDKVWTI AILSHRRPPR PVNTTLMRLW 70 80 90 100 110 120 ASEIANIPLW LFEESYHIVG DLAETIALVI PPSSASSEKS LSQFLQEIID LKPKSEEEKK 130 140 150 160 170 180 EYLKENWLSL NYYERFVFTK LITGSFRIGV SQKLMTRALS KATDIDEDIL AYKMMGDWNA 190 200 210 220 230 240 AKTTYTKLIL EENEEDFLSK PYPFYLAYAI EDQPEDLGDV NQWSAEHKWD GIRSQVIIRN 250 260 270 280 290 300 NELFVWSRGE ELVTDKYPEF EKFVGVIPNG TVIDGEILPF PKGEIGTFKD LQTRIGRKTV 310 320 330 340 350 360 SKNLLKKTPV ILKAYDVLEW HGEDIRQKAF KDRRAILEKL YTEVKSDGLP LHLSYTIQFK 370 380 390 400 410 420 SWEEAAEERE RSREVKSEGL MLKRLDSPYL VGRKKGDWWK WKVDPLTIDA VLTYAMRGHG 430 440 450 460 470 480 RRSNLFTDYT FGLWDEKKEE LVTFAKAYSG LTDAEFRKLD AWIKKNTLER FGPVRSVTPH 490 500 510 520 530 HVFEVAFEGI AESKRHKSGV ATRFPRILRW RTDKKIEEAN TLEDLKALIP

References

[1]

"The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation." Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z. BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 18752 / CCTCC AB 206139 / SM-A87.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001650 Genomic DNA. Translation: ADF50830.1.
RefSeq	YP_003583026.1. NC_014041.1.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADF50830; ADF50830; ZPR_0472.
GeneID	9076348.
KEGG	zpr:ZPR_0472.
PATRIC	37230429. VBIZunPro130839_0459.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000036007.
KO	K01971.
OMA	AYDLLEW.
Family and domain databases
Gene3D	2.40.50.140. 1 hit.
InterPro	IPR026333. ATP_dep_DNA_lig_pp_1105_fam. IPR012309. DNA_ligase_ATP-dep_C. IPR012310. DNA_ligase_ATP-dep_cent. IPR012308. DNA_ligase_ATP-dep_N. IPR012340. NA-bd_OB-fold. [Graphical view]
Pfam	PF04679. DNA_ligase_A_C. 1 hit. PF01068. DNA_ligase_A_M. 1 hit. PF04675. DNA_ligase_A_N. 1 hit. [Graphical view]
SUPFAM	SSF50249. Nucleic_acid_OB. 1 hit. SSF117018. SSF117018. 1 hit.
TIGRFAMs	TIGR04120. DNA_lig_bact. 1 hit.
PROSITE	PS50160. DNA_LIGASE_A3. 1 hit. [Graphical view]
ProtoNet	Search...

Entry information

Entry name

D5BEV1_ZUNPS

Accession

Primary (citable) accession number: D5BEV1

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 20 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)