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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

ZPR_0472

Organism
Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciZPRO655815:GI6J-472-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:ZPR_0472Imported
OrganismiZunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)Imported
Taxonomic identifieri655815 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZunongwangia
ProteomesiUP000001654: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5BEV1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MRQFAELIKT LDSTNKTTLK VEALTKYFNN APDRDKVWTI AILSHRRPPR
60 70 80 90 100
PVNTTLMRLW ASEIANIPLW LFEESYHIVG DLAETIALVI PPSSASSEKS
110 120 130 140 150
LSQFLQEIID LKPKSEEEKK EYLKENWLSL NYYERFVFTK LITGSFRIGV
160 170 180 190 200
SQKLMTRALS KATDIDEDIL AYKMMGDWNA AKTTYTKLIL EENEEDFLSK
210 220 230 240 250
PYPFYLAYAI EDQPEDLGDV NQWSAEHKWD GIRSQVIIRN NELFVWSRGE
260 270 280 290 300
ELVTDKYPEF EKFVGVIPNG TVIDGEILPF PKGEIGTFKD LQTRIGRKTV
310 320 330 340 350
SKNLLKKTPV ILKAYDVLEW HGEDIRQKAF KDRRAILEKL YTEVKSDGLP
360 370 380 390 400
LHLSYTIQFK SWEEAAEERE RSREVKSEGL MLKRLDSPYL VGRKKGDWWK
410 420 430 440 450
WKVDPLTIDA VLTYAMRGHG RRSNLFTDYT FGLWDEKKEE LVTFAKAYSG
460 470 480 490 500
LTDAEFRKLD AWIKKNTLER FGPVRSVTPH HVFEVAFEGI AESKRHKSGV
510 520 530
ATRFPRILRW RTDKKIEEAN TLEDLKALIP
Length:530
Mass (Da):61,647
Last modified:June 15, 2010 - v1
Checksum:i778D9F5D36FD821F
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001650 Genomic DNA. Translation: ADF50830.1.
RefSeqiYP_003583026.1. NC_014041.1.

Genome annotation databases

EnsemblBacteriaiADF50830; ADF50830; ZPR_0472.
GeneIDi9076348.
KEGGizpr:ZPR_0472.
PATRICi37230429. VBIZunPro130839_0459.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001650 Genomic DNA. Translation: ADF50830.1.
RefSeqiYP_003583026.1. NC_014041.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADF50830; ADF50830; ZPR_0472.
GeneIDi9076348.
KEGGizpr:ZPR_0472.
PATRICi37230429. VBIZunPro130839_0459.

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK10747.
OMAiGQPYPFF.

Enzyme and pathway databases

BioCyciZPRO655815:GI6J-472-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
    Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
    BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 18752 / CCTCC AB 206139 / SM-A87Imported.

Entry informationi

Entry nameiD5BEV1_ZUNPS
AccessioniPrimary (citable) accession number: D5BEV1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: March 4, 2015
This is version 30 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.