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D5BEV1 (D5BEV1_ZUNPS) Unreviewed, UniProtKB/TrEMBL

Last modified May 14, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein attributes

Sequence length530 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Keywords
   Molecular functionLigase EMBL ADF50830.1
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processDNA recombination

Inferred from electronic annotation. Source: InterPro

DNA repair

Inferred from electronic annotation. Source: InterPro

   Molecular_functionATP binding

Inferred from electronic annotation. Source: InterPro

DNA binding

Inferred from electronic annotation. Source: InterPro

DNA ligase (ATP) activity

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D5BEV1 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 778D9F5D36FD821F

FASTA53061,647
        10         20         30         40         50         60 
MRQFAELIKT LDSTNKTTLK VEALTKYFNN APDRDKVWTI AILSHRRPPR PVNTTLMRLW 

        70         80         90        100        110        120 
ASEIANIPLW LFEESYHIVG DLAETIALVI PPSSASSEKS LSQFLQEIID LKPKSEEEKK 

       130        140        150        160        170        180 
EYLKENWLSL NYYERFVFTK LITGSFRIGV SQKLMTRALS KATDIDEDIL AYKMMGDWNA 

       190        200        210        220        230        240 
AKTTYTKLIL EENEEDFLSK PYPFYLAYAI EDQPEDLGDV NQWSAEHKWD GIRSQVIIRN 

       250        260        270        280        290        300 
NELFVWSRGE ELVTDKYPEF EKFVGVIPNG TVIDGEILPF PKGEIGTFKD LQTRIGRKTV 

       310        320        330        340        350        360 
SKNLLKKTPV ILKAYDVLEW HGEDIRQKAF KDRRAILEKL YTEVKSDGLP LHLSYTIQFK 

       370        380        390        400        410        420 
SWEEAAEERE RSREVKSEGL MLKRLDSPYL VGRKKGDWWK WKVDPLTIDA VLTYAMRGHG 

       430        440        450        460        470        480 
RRSNLFTDYT FGLWDEKKEE LVTFAKAYSG LTDAEFRKLD AWIKKNTLER FGPVRSVTPH 

       490        500        510        520        530 
HVFEVAFEGI AESKRHKSGV ATRFPRILRW RTDKKIEEAN TLEDLKALIP 

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References

[1]"The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18752 / CCTCC AB 206139 / SM-A87.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001650 Genomic DNA. Translation: ADF50830.1.
RefSeqYP_003583026.1. NC_014041.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADF50830; ADF50830; ZPR_0472.
GeneID9076348.
KEGGzpr:ZPR_0472.
PATRIC37230429. VBIZunPro130839_0459.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000036007.
KOK01971.
OMANRHKSGV.

Enzyme and pathway databases

BioCycZPRO655815:GI6J-472-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR04120. DNA_lig_bact. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD5BEV1_ZUNPS
AccessionPrimary (citable) accession number: D5BEV1
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)