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D5BEV1

- D5BEV1_ZUNPS

UniProt

D5BEV1 - D5BEV1_ZUNPS

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
ZPR_0472
Organism
Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciZPRO655815:GI6J-472-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported
Gene namesi
Ordered Locus Names:ZPR_0472Imported
OrganismiZunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)Imported
Taxonomic identifieri655815 [NCBI]
Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZunongwangia
ProteomesiUP000001654: Chromosome

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000036007.
KOiK01971.
OMAiNRHKSGV.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR04120. DNA_lig_bact. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D5BEV1-1 [UniParc]FASTAAdd to Basket

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MRQFAELIKT LDSTNKTTLK VEALTKYFNN APDRDKVWTI AILSHRRPPR    50
PVNTTLMRLW ASEIANIPLW LFEESYHIVG DLAETIALVI PPSSASSEKS 100
LSQFLQEIID LKPKSEEEKK EYLKENWLSL NYYERFVFTK LITGSFRIGV 150
SQKLMTRALS KATDIDEDIL AYKMMGDWNA AKTTYTKLIL EENEEDFLSK 200
PYPFYLAYAI EDQPEDLGDV NQWSAEHKWD GIRSQVIIRN NELFVWSRGE 250
ELVTDKYPEF EKFVGVIPNG TVIDGEILPF PKGEIGTFKD LQTRIGRKTV 300
SKNLLKKTPV ILKAYDVLEW HGEDIRQKAF KDRRAILEKL YTEVKSDGLP 350
LHLSYTIQFK SWEEAAEERE RSREVKSEGL MLKRLDSPYL VGRKKGDWWK 400
WKVDPLTIDA VLTYAMRGHG RRSNLFTDYT FGLWDEKKEE LVTFAKAYSG 450
LTDAEFRKLD AWIKKNTLER FGPVRSVTPH HVFEVAFEGI AESKRHKSGV 500
ATRFPRILRW RTDKKIEEAN TLEDLKALIP 530
Length:530
Mass (Da):61,647
Last modified:June 15, 2010 - v1
Checksum:i778D9F5D36FD821F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001650 Genomic DNA. Translation: ADF50830.1.
RefSeqiYP_003583026.1. NC_014041.1.

Genome annotation databases

EnsemblBacteriaiADF50830; ADF50830; ZPR_0472.
GeneIDi9076348.
KEGGizpr:ZPR_0472.
PATRICi37230429. VBIZunPro130839_0459.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
CP001650 Genomic DNA. Translation: ADF50830.1 .
RefSeqi YP_003583026.1. NC_014041.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai ADF50830 ; ADF50830 ; ZPR_0472 .
GeneIDi 9076348.
KEGGi zpr:ZPR_0472.
PATRICi 37230429. VBIZunPro130839_0459.

Phylogenomic databases

HOGENOMi HOG000036007.
KOi K01971.
OMAi NRHKSGV.

Enzyme and pathway databases

BioCyci ZPRO655815:GI6J-472-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR026333. ATP_dep_DNA_lig_pp_1105_fam.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR04120. DNA_lig_bact. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
    Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
    BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: DSM 18752 / CCTCC AB 206139 / SM-A87.

Entry informationi

Entry nameiD5BEV1_ZUNPS
AccessioniPrimary (citable) accession number: D5BEV1
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 14, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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