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D5BDK5 (D5BDK5_ZUNPS) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length368 AA.
Sequence statusComplete.
Protein existenceEvidence at protein level

General annotation (Comments)

Function

Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids By similarity. HAMAP-Rule MF_01201

Catalytic activity

L-alanine = D-alanine. HAMAP-Rule MF_01201

Cofactor

Pyridoxal phosphate By similarity. HAMAP-Rule MF_01201 SAAS SAAS001608

Pathway

Amino-acid biosynthesis; D-alanine biosynthesis; D-alanine from L-alanine: step 1/1. HAMAP-Rule MF_01201

Sequence similarities

Belongs to the alanine racemase family. HAMAP-Rule MF_01201 RuleBase RU004188

Ontologies

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site381Proton acceptor; specific for D-alanine By similarity HAMAP-Rule MF_01201
Active site2641Proton acceptor; specific for L-alanine By similarity HAMAP-Rule MF_01201
Binding site1361Substrate By similarity HAMAP-Rule MF_01201
Binding site3131Substrate; via amide nitrogen By similarity HAMAP-Rule MF_01201

Amino acid modifications

Modified residue381N6-(pyridoxal phosphate)lysine By similarity HAMAP-Rule MF_01201

Sequences

Sequence LengthMass (Da)Tools
D5BDK5 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 227669E445C523E7

FASTA36840,705
        10         20         30         40         50         60 
MPKAQETVLE IDLKSLEHNY QYLRSKVEPT VKMMAVVKAF AYGSDSVTIA AKLEKAGIDH 

        70         80         90        100        110        120 
FAVAYTKEGE TLRAGGIEKP VLVLHPQPHN LTLLIDNCLT PSLYSKHILT EFIKTAEALK 

       130        140        150        160        170        180 
LKEYPVHINI NTGLNRLGFG LEEIDQVITL FKNTLAVRLV GIYSHLAASE DLAEKEFTQG 

       190        200        210        220        230        240 
QIETFKKASG KILKAFDHKI MRHLCNTSGI LNYPEATFDM VRTGIGLYGY GNSAQEDKKL 

       250        260        270        280        290        300 
KPVGTLKTII SQIHNIKAEE SVGYNRAFIA KRDTTTATLP IGHADGISRI YGKQKTAVLI 

       310        320        330        340        350        360 
NDKEAPIIGN VCMDMIMVDV TGIECKEGDQ VIIFGKERSA EKLANNAGTI SYELITSISQ 


RVKRLIID 

« Hide

References

[1]"The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18752 / CCTCC AB 206139 / SM-A87.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001650 Genomic DNA. Translation: ADF54911.1.
RefSeqYP_003587107.1. NC_014041.1.

3D structure databases

ProteinModelPortalD5BDK5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADF54911; ADF54911; ZPR_4611.
GeneID9080482.
KEGGzpr:ZPR_4611.
PATRIC37238526. VBIZunPro130839_4456.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000031444.
KOK01775.
OMAPSECAGV.

Enzyme and pathway databases

BioCycZPRO655815:GI6J-4606-MONOMER.
UniPathwayUPA00042; UER00497.

Family and domain databases

Gene3D2.40.37.10. 1 hit.
3.20.20.10. 1 hit.
HAMAPMF_01201. Ala_racemase.
InterProIPR000821. Ala_racemase.
IPR009006. Ala_racemase/Decarboxylase_C.
IPR011079. Ala_racemase_C.
IPR001608. Ala_racemase_N.
IPR029066. PLP-binding_barrel.
[Graphical view]
PfamPF00842. Ala_racemase_C. 1 hit.
PF01168. Ala_racemase_N. 1 hit.
[Graphical view]
PRINTSPR00992. ALARACEMASE.
SMARTSM01005. Ala_racemase_C. 1 hit.
[Graphical view]
SUPFAMSSF50621. SSF50621. 1 hit.
SSF51419. SSF51419. 1 hit.
TIGRFAMsTIGR00492. alr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5BDK5_ZUNPS
AccessionPrimary (citable) accession number: D5BDK5
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: July 9, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)