D5BDK5 (D5BDK5_ZUNPS) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Alanine racemase EMBL ADF54911.1

Gene names

Ordered Locus Names:

ZPR_4611

Organism

Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) [Complete proteome] [HAMAP]

Taxonomic identifier

655815 [NCBI]

Taxonomic lineage

cellular organisms › Bacteria › Bacteroidetes/Chlorobi group › Bacteroidetes › Flavobacteriia › Flavobacteriales › Flavobacteriaceae › Zunongwangia › Zunongwangia profunda

Protein attributes

Sequence length	368 AA.
Sequence status	Complete.
Protein existence	Inferred from homology

General annotation (Comments)

Cofactor	Pyridoxal phosphate By similarity. SAAS SAAS011079
Sequence similarities	Belongs to the alanine racemase family. RuleBase RU004188

Ontologies

Keywords
Ligand	Pyridoxal phosphate SAAS SAAS011079
Molecular function	Isomerase SAAS SAAS011079
Technical term	Complete proteome
Gene Ontology (GO)
Biological_process	alanine metabolic process Inferred from electronic annotation. Source: InterPro
Molecular_function	alanine racemase activity Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D5BDK5 [UniParc]. Last modified June 15, 2010. Version 1. Checksum: 227669E445C523E7	FASTA	368	40,705
	10 20 30 40 50 60 MPKAQETVLE IDLKSLEHNY QYLRSKVEPT VKMMAVVKAF AYGSDSVTIA AKLEKAGIDH 70 80 90 100 110 120 FAVAYTKEGE TLRAGGIEKP VLVLHPQPHN LTLLIDNCLT PSLYSKHILT EFIKTAEALK 130 140 150 160 170 180 LKEYPVHINI NTGLNRLGFG LEEIDQVITL FKNTLAVRLV GIYSHLAASE DLAEKEFTQG 190 200 210 220 230 240 QIETFKKASG KILKAFDHKI MRHLCNTSGI LNYPEATFDM VRTGIGLYGY GNSAQEDKKL 250 260 270 280 290 300 KPVGTLKTII SQIHNIKAEE SVGYNRAFIA KRDTTTATLP IGHADGISRI YGKQKTAVLI 310 320 330 340 350 360 NDKEAPIIGN VCMDMIMVDV TGIECKEGDQ VIIFGKERSA EKLANNAGTI SYELITSISQ RVKRLIID

References

[1]

"The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation." Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z. BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: DSM 18752 / CCTCC AB 206139 / SM-A87.

Cross-references

Sequence databases
EMBL GenBank DDBJ	CP001650 Genomic DNA. Translation: ADF54911.1.
RefSeq	YP_003587107.1. NC_014041.1.
3D structure databases
ProteinModelPortal	D5BDK5.
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
EnsemblBacteria	ADF54911; ADF54911; ZPR_4611.
GeneID	9080482.
KEGG	zpr:ZPR_4611.
PATRIC	37238526. VBIZunPro130839_4456.
Organism-specific databases
CMR	Search...
Phylogenomic databases
HOGENOM	HOG000031444.
KO	K01775.
OMA	CNTSGIL.
Family and domain databases
Gene3D	2.40.37.10. 1 hit.
HAMAP	MF_01201. Ala_racemase.
InterPro	IPR000821. Ala_racemase. IPR009006. Ala_racemase/Decarboxylase_C. IPR011079. Ala_racemase_C. IPR001608. Ala_racemase_N. [Graphical view]
Pfam	PF00842. Ala_racemase_C. 1 hit. PF01168. Ala_racemase_N. 1 hit. [Graphical view]
PRINTS	PR00992. ALARACEMASE.
SMART	SM01005. Ala_racemase_C. 1 hit. [Graphical view]
SUPFAM	SSF50621. Racem_decarbox_C. 1 hit.
TIGRFAMs	TIGR00492. alr. 1 hit.
ProtoNet	Search...

Entry information

Entry name

D5BDK5_ZUNPS

Accession

Primary (citable) accession number: D5BDK5

Entry history

Integrated into UniProtKB/TrEMBL:	June 15, 2010
Last sequence update:	June 15, 2010
Last modified:	May 1, 2013
This is version 26 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)