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D5BCB7 (D5BCB7_ZUNPS) Unreviewed, UniProtKB/TrEMBL

Last modified June 11, 2014. Version 26. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
tRNA pseudouridine synthase B HAMAP-Rule MF_01080

EC=5.4.99.25 HAMAP-Rule MF_01080
Alternative name(s):
tRNA pseudouridine(55) synthase HAMAP-Rule MF_01080
tRNA pseudouridylate synthase HAMAP-Rule MF_01080
tRNA-uridine isomerase HAMAP-Rule MF_01080
Gene names
Name:truB HAMAP-Rule MF_01080
Ordered Locus Names:ZPR_4442 EMBL ADF54743.1
OrganismZunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87) [Complete proteome] [HAMAP] EMBL ADF54743.1
Taxonomic identifier655815 [NCBI]
Taxonomic lineageBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZunongwangia

Protein attributes

Sequence length239 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs By similarity. HAMAP-Rule MF_01080

Catalytic activity

tRNA uridine55 = tRNA pseudouridine55. HAMAP-Rule MF_01080

Sequence similarities

Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. HAMAP-Rule MF_01080

Ontologies

Keywords
   Biological processtRNA processing HAMAP-Rule MF_01080 SAAS SAAS014780
   Molecular functionIsomerase HAMAP-Rule MF_01080 SAAS SAAS014780
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processtRNA pseudouridine synthesis

Inferred from electronic annotation. Source: UniProtKB-HAMAP

   Molecular_functionRNA binding

Inferred from electronic annotation. Source: InterPro

pseudouridine synthase activity

Inferred from electronic annotation. Source: UniProtKB-HAMAP

Complete GO annotation...

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Active site561Nucleophile By similarity HAMAP-Rule MF_01080

Sequences

Sequence LengthMass (Da)Tools
D5BCB7 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: FEE066F92F81E6E2

FASTA23926,864
        10         20         30         40         50         60 
MDHPIITAEE FKTGQILLFD KPLNWTSFQL VNKVRWMIRK SCDIKKIKVG HAGTLDPLAT 

        70         80         90        100        110        120 
GLLIICTGKF TKRIPELQGQ IKEYTGTFCL GSTTASYDLE TEIDETFPID HITEENIAET 

       130        140        150        160        170        180 
TKSFIGDIEQ LPPVFSALKK DGKRLYEYAR KGEEVEIKPR TISIEAFETD ASDFPDINFR 

       190        200        210        220        230 
VVCSKGTYIR SLAHDFGKKL NSGAHLSSLR RTKIGDFSIE NSLGLDDFEK QLPRPVSGA 

« Hide

References

[1]"The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: DSM 18752 / CCTCC AB 206139 / SM-A87.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001650 Genomic DNA. Translation: ADF54743.1.
RefSeqYP_003586939.1. NC_014041.1.

3D structure databases

ProteinModelPortalD5BCB7.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADF54743; ADF54743; ZPR_4442.
GeneID9080313.
KEGGzpr:ZPR_4442.
PATRIC37238188. VBIZunPro130839_4288.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000231223.
KOK03177.
OMAPKNISSA.

Enzyme and pathway databases

BioCycZPRO655815:GI6J-4437-MONOMER.

Family and domain databases

HAMAPMF_01080. TruB_bact.
InterProIPR002501. PsdUridine_synth.
IPR020103. PsdUridine_synth_cat_dom.
IPR014780. tRNA_psdUridine_synth_TruB.
[Graphical view]
PANTHERPTHR13767. PTHR13767. 1 hit.
PfamPF01509. TruB_N. 1 hit.
[Graphical view]
SUPFAMSSF55120. SSF55120. 1 hit.
TIGRFAMsTIGR00431. TruB. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD5BCB7_ZUNPS
AccessionPrimary (citable) accession number: D5BCB7
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: June 11, 2014
This is version 26 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)