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D5BCB7

- D5BCB7_ZUNPS

UniProt

D5BCB7 - D5BCB7_ZUNPS

Protein

tRNA pseudouridine synthase B

Gene

truB

Organism
Zunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 28 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs.UniRule annotation

    Catalytic activityi

    tRNA uridine(55) = tRNA pseudouridine(55).UniRule annotation

    Sites

    Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
    Active sitei56 – 561NucleophileUniRule annotation

    GO - Molecular functioni

    1. pseudouridine synthase activity Source: UniProtKB-HAMAP
    2. RNA binding Source: InterPro

    GO - Biological processi

    1. tRNA pseudouridine synthesis Source: UniProtKB-HAMAP

    Keywords - Molecular functioni

    IsomeraseUniRule annotationSAAS annotation

    Keywords - Biological processi

    tRNA processingUniRule annotationSAAS annotation

    Enzyme and pathway databases

    BioCyciZPRO655815:GI6J-4437-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    tRNA pseudouridine synthase BUniRule annotation (EC:5.4.99.25UniRule annotation)
    Alternative name(s):
    tRNA pseudouridine(55) synthaseUniRule annotation
    tRNA pseudouridylate synthaseUniRule annotation
    tRNA-uridine isomeraseUniRule annotation
    Gene namesi
    Name:truBUniRule annotation
    Ordered Locus Names:ZPR_4442Imported
    OrganismiZunongwangia profunda (strain DSM 18752 / CCTCC AB 206139 / SM-A87)Imported
    Taxonomic identifieri655815 [NCBI]
    Taxonomic lineageiBacteriaBacteroidetesFlavobacteriiaFlavobacterialesFlavobacteriaceaeZunongwangia
    ProteomesiUP000001654: Chromosome

    Structurei

    3D structure databases

    ProteinModelPortaliD5BCB7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the pseudouridine synthase TruB family. Type 1 subfamily.UniRule annotation

    Phylogenomic databases

    HOGENOMiHOG000231223.
    KOiK03177.
    OMAiPKNISSA.

    Family and domain databases

    HAMAPiMF_01080. TruB_bact.
    InterProiIPR002501. PsdUridine_synth.
    IPR020103. PsdUridine_synth_cat_dom.
    IPR014780. tRNA_psdUridine_synth_TruB.
    [Graphical view]
    PANTHERiPTHR13767. PTHR13767. 1 hit.
    PfamiPF01509. TruB_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF55120. SSF55120. 1 hit.
    TIGRFAMsiTIGR00431. TruB. 1 hit.

    Sequencei

    Sequence statusi: Complete.

    D5BCB7-1 [UniParc]FASTAAdd to Basket

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    MDHPIITAEE FKTGQILLFD KPLNWTSFQL VNKVRWMIRK SCDIKKIKVG    50
    HAGTLDPLAT GLLIICTGKF TKRIPELQGQ IKEYTGTFCL GSTTASYDLE 100
    TEIDETFPID HITEENIAET TKSFIGDIEQ LPPVFSALKK DGKRLYEYAR 150
    KGEEVEIKPR TISIEAFETD ASDFPDINFR VVCSKGTYIR SLAHDFGKKL 200
    NSGAHLSSLR RTKIGDFSIE NSLGLDDFEK QLPRPVSGA 239
    Length:239
    Mass (Da):26,864
    Last modified:June 15, 2010 - v1
    Checksum:iFEE066F92F81E6E2
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001650 Genomic DNA. Translation: ADF54743.1.
    RefSeqiWP_013073803.1. NC_014041.1.
    YP_003586939.1. NC_014041.1.

    Genome annotation databases

    EnsemblBacteriaiADF54743; ADF54743; ZPR_4442.
    GeneIDi9080313.
    KEGGizpr:ZPR_4442.
    PATRICi37238188. VBIZunPro130839_4288.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    CP001650 Genomic DNA. Translation: ADF54743.1 .
    RefSeqi WP_013073803.1. NC_014041.1.
    YP_003586939.1. NC_014041.1.

    3D structure databases

    ProteinModelPortali D5BCB7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai ADF54743 ; ADF54743 ; ZPR_4442 .
    GeneIDi 9080313.
    KEGGi zpr:ZPR_4442.
    PATRICi 37238188. VBIZunPro130839_4288.

    Phylogenomic databases

    HOGENOMi HOG000231223.
    KOi K03177.
    OMAi PKNISSA.

    Enzyme and pathway databases

    BioCyci ZPRO655815:GI6J-4437-MONOMER.

    Family and domain databases

    HAMAPi MF_01080. TruB_bact.
    InterProi IPR002501. PsdUridine_synth.
    IPR020103. PsdUridine_synth_cat_dom.
    IPR014780. tRNA_psdUridine_synth_TruB.
    [Graphical view ]
    PANTHERi PTHR13767. PTHR13767. 1 hit.
    Pfami PF01509. TruB_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF55120. SSF55120. 1 hit.
    TIGRFAMsi TIGR00431. TruB. 1 hit.
    ProtoNeti Search...

    Publicationsi

    1. "The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation."
      Qin Q.L., Zhang X.Y., Wang X.M., Liu G.M., Chen X.L., Xie B.B., Dang H.Y., Zhou B.C., Yu J., Zhang Y.Z.
      BMC Genomics 11:247-247(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: DSM 18752 / CCTCC AB 206139 / SM-A87Imported.

    Entry informationi

    Entry nameiD5BCB7_ZUNPS
    AccessioniPrimary (citable) accession number: D5BCB7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 28 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3