Skip Header

You are using a version of Internet Explorer that may not display all features of this website. Please upgrade to a modern browser.
Contribute Send feedback
Read comments (?) or add your own

D4ZE74 (D4ZE74_SHEVD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 25. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequence annotation·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein namesRecommended name:
Elongation factor Tu HAMAP-Rule MF_00118

Short name=EF-Tu HAMAP-Rule MF_00118
Gene names
Name:tufA-1 EMBL BAJ04135.1
Synonyms:tuf HAMAP-Rule MF_00118, tufA-2 EMBL BAJ04147.1
Ordered Locus Names:SVI_4164 EMBL BAJ04135.1, SVI_4176 EMBL BAJ04147.1
OrganismShewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) [Complete proteome] [HAMAP] EMBL BAJ04135.1
Taxonomic identifier637905 [NCBI]
Taxonomic lineageBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella

Protein attributes

Sequence length394 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity. RuleBase RU000325 HAMAP-Rule MF_00118

Subunit structure

Monomer By similarity. HAMAP-Rule MF_00118

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00118.

Sequence similarities

Belongs to the GTP-binding elongation factor family. EF-Tu/EF-1A subfamily. RuleBase RU000325 HAMAP-Rule MF_00118

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding19 – 268GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding81 – 855GTP By similarity HAMAP-Rule MF_00118
Nucleotide binding136 – 1394GTP By similarity HAMAP-Rule MF_00118

Sequences

Sequence LengthMass (Da)Tools
D4ZE74 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: D85FDA0A1A2DFDA9

FASTA39443,110
        10         20         30         40         50         60 
MAKEKFERNK PHVNVGTIGH VDHGKTTLTA AISAVLAKTY GGDVKDFSQI DNAPEERERG 

        70         80         90        100        110        120 
ITINTSHIEY DTPARHYAHV DCPGHADYVK NMITGAAQMD GAILVVASTD GPMPQTREHI 

       130        140        150        160        170        180 
LLSRQVGVPF IIVFMNKCDM VDDEELLELV EMEVRELLSE YDFPGDDLPV IQGSALKALE 

       190        200        210        220        230        240 
GEAEWEAKII ELAEALDTYI PEPERAIDGA FLLPIEDVFS ISGRGTVVTG RVERGIIKVG 

       250        260        270        280        290        300 
EEVEIVGIKD TTKSTCTGVE MFRKLLDEGR AGENCGVLLR GIKREDVERG QVLAAPASIT 

       310        320        330        340        350        360 
PHTTFESEIY VLSKEEGGRH TPFFKGYRPQ FFFRTTDVTG TIELPEGVEM VMPGDNVQMV 

       370        380        390 
VTLIAPIAMD EGLRFAIREG GRTVGAGVVA KILA 

« Hide

References

« Hide 'large scale' references
[1]"Shewanella violocea DSS2 complete genome."
Mori H.
Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DSS12 EMBL BAJ04135.1.
[2]"Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments."
Aono E., Baba T., Ara T., Nishi T., Nakamichi T., Inamoto E., Toyonaga H., Hasegawa M., Takai Y., Okumura Y., Baba M., Tomita M., Kato C., Oshima T., Nakasone K., Mori H.
Mol. Biosyst. 6:1216-1226(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10179 / CIP 106290 / LMG 19151 / DSS12.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP011177 Genomic DNA. Translation: BAJ04135.1.
AP011177 Genomic DNA. Translation: BAJ04147.1.
RefSeqYP_003558913.1. NC_014012.1.
YP_003558925.1. NC_014012.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAJ04135; BAJ04135; SVI_4164.
BAJ04147; BAJ04147; SVI_4176.
GeneID8969145.
8969235.
KEGGsvo:SVI_4164.
svo:SVI_4176.
PATRIC35464520. VBISheVio92117_3998.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229290.
KOK02358.
OMAVTPHTEF.

Enzyme and pathway databases

BioCycSVIO637905:GCRO-4320-MONOMER.
SVIO637905:GCRO-4332-MONOMER.

Family and domain databases

Gene3D3.40.50.300. 1 hit.
HAMAPMF_00118_B. EF_Tu_B.
InterProIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSPR00315. ELONGATNFCT.
SUPFAMSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD4ZE74_SHEVD
AccessionPrimary (citable) accession number: D4ZE74
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 16, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)