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D4ZE74

- D4ZE74_SHEVD

UniProt

D4ZE74 - D4ZE74_SHEVD

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Protein
Elongation factor Tu
Gene
tufA-1, tuf, tufA-2, SVI_4164, SVI_4176
Organism
Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis By similarity.UniRule annotation

Regions

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Nucleotide bindingi19 – 268GTP By similarityUniRule annotation
Nucleotide bindingi81 – 855GTP By similarityUniRule annotation
Nucleotide bindingi136 – 1394GTP By similarityUniRule annotation

GO - Molecular functioni

  1. GTP binding Source: UniProtKB-HAMAP
  2. GTPase activity Source: InterPro
  3. translation elongation factor activity Source: UniProtKB-HAMAP
Complete GO annotation...

Keywords - Molecular functioni

Elongation factorUniRule annotationImported

Keywords - Biological processi

Protein biosynthesis

Keywords - Ligandi

GTP-bindingUniRule annotation, Nucleotide-binding

Enzyme and pathway databases

BioCyciSVIO637905:GCRO-4320-MONOMER.
SVIO637905:GCRO-4332-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Elongation factor TuUniRule annotation
Short name:
EF-TuUniRule annotation
Gene namesi
Name:tufA-1Imported
Synonyms:tufUniRule annotation, tufA-2Imported
Ordered Locus Names:SVI_4164Imported, SVI_4176Imported
OrganismiShewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)Imported
Taxonomic identifieri637905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002350: Chromosome

Subcellular locationi

Cytoplasm By similarity UniRule annotation

GO - Cellular componenti

  1. cytoplasm Source: UniProtKB-SubCell
Complete GO annotation...

Keywords - Cellular componenti

CytoplasmUniRule annotation

Interactioni

Subunit structurei

Monomer By similarity.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

HOGENOMiHOG000229290.
KOiK02358.
OMAiGTEMCMP.

Family and domain databases

Gene3Di3.40.50.300. 1 hit.
HAMAPiMF_00118_B. EF_Tu_B.
InterProiIPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view]
PfamiPF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view]
PRINTSiPR00315. ELONGATNFCT.
SUPFAMiSSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsiTIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEiPS00301. EFACTOR_GTP. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4ZE74-1 [UniParc]FASTAAdd to Basket

« Hide

MAKEKFERNK PHVNVGTIGH VDHGKTTLTA AISAVLAKTY GGDVKDFSQI    50
DNAPEERERG ITINTSHIEY DTPARHYAHV DCPGHADYVK NMITGAAQMD 100
GAILVVASTD GPMPQTREHI LLSRQVGVPF IIVFMNKCDM VDDEELLELV 150
EMEVRELLSE YDFPGDDLPV IQGSALKALE GEAEWEAKII ELAEALDTYI 200
PEPERAIDGA FLLPIEDVFS ISGRGTVVTG RVERGIIKVG EEVEIVGIKD 250
TTKSTCTGVE MFRKLLDEGR AGENCGVLLR GIKREDVERG QVLAAPASIT 300
PHTTFESEIY VLSKEEGGRH TPFFKGYRPQ FFFRTTDVTG TIELPEGVEM 350
VMPGDNVQMV VTLIAPIAMD EGLRFAIREG GRTVGAGVVA KILA 394
Length:394
Mass (Da):43,110
Last modified:June 15, 2010 - v1
Checksum:iD85FDA0A1A2DFDA9
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP011177 Genomic DNA. Translation: BAJ04135.1.
AP011177 Genomic DNA. Translation: BAJ04147.1.
RefSeqiWP_013053420.1. NC_014012.1.
YP_003558913.1. NC_014012.1.
YP_003558925.1. NC_014012.1.

Genome annotation databases

EnsemblBacteriaiBAJ04135; BAJ04135; SVI_4164.
BAJ04147; BAJ04147; SVI_4176.
GeneIDi8969145.
8969235.
KEGGisvo:SVI_4164.
svo:SVI_4176.
PATRICi35464520. VBISheVio92117_3998.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP011177 Genomic DNA. Translation: BAJ04135.1 .
AP011177 Genomic DNA. Translation: BAJ04147.1 .
RefSeqi WP_013053420.1. NC_014012.1.
YP_003558913.1. NC_014012.1.
YP_003558925.1. NC_014012.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAJ04135 ; BAJ04135 ; SVI_4164 .
BAJ04147 ; BAJ04147 ; SVI_4176 .
GeneIDi 8969145.
8969235.
KEGGi svo:SVI_4164.
svo:SVI_4176.
PATRICi 35464520. VBISheVio92117_3998.

Phylogenomic databases

HOGENOMi HOG000229290.
KOi K02358.
OMAi GTEMCMP.

Enzyme and pathway databases

BioCyci SVIO637905:GCRO-4320-MONOMER.
SVIO637905:GCRO-4332-MONOMER.

Family and domain databases

Gene3Di 3.40.50.300. 1 hit.
HAMAPi MF_00118_B. EF_Tu_B.
InterProi IPR000795. EF_GTP-bd_dom.
IPR027417. P-loop_NTPase.
IPR005225. Small_GTP-bd_dom.
IPR009000. Transl_B-barrel.
IPR009001. Transl_elong_EF1A/Init_IF2_C.
IPR004161. Transl_elong_EFTu/EF1A_2.
IPR004541. Transl_elong_EFTu/EF1A_bac/org.
IPR004160. Transl_elong_EFTu/EF1A_C.
[Graphical view ]
Pfami PF00009. GTP_EFTU. 1 hit.
PF03144. GTP_EFTU_D2. 1 hit.
PF03143. GTP_EFTU_D3. 1 hit.
[Graphical view ]
PRINTSi PR00315. ELONGATNFCT.
SUPFAMi SSF50447. SSF50447. 1 hit.
SSF50465. SSF50465. 1 hit.
SSF52540. SSF52540. 1 hit.
TIGRFAMsi TIGR00485. EF-Tu. 1 hit.
TIGR00231. small_GTP. 1 hit.
PROSITEi PS00301. EFACTOR_GTP. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Shewanella violocea DSS2 complete genome."
    Mori H.
    Submitted (APR-2009) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DSS12Imported.
  2. "Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments."
    Aono E., Baba T., Ara T., Nishi T., Nakamichi T., Inamoto E., Toyonaga H., Hasegawa M., Takai Y., Okumura Y., Baba M., Tomita M., Kato C., Oshima T., Nakasone K., Mori H.
    Mol. Biosyst. 6:1216-1226(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 10179 / CIP 106290 / LMG 19151 / DSS12.

Entry informationi

Entry nameiD4ZE74_SHEVD
AccessioniPrimary (citable) accession number: D4ZE74
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: September 3, 2014
This is version 28 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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