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Protein
Submitted name:

Glutamate decarboxylase, putative

Gene

SVI_3021

Organism
Shewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

Cofactori

pyridoxal 5'-phosphateUniRule annotation

GO - Molecular functioni

GO - Biological processi

Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotation

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciSVIO637905:GCRO-3126-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
Glutamate decarboxylase, putativeImported
Gene namesi
Ordered Locus Names:SVI_3021Imported
OrganismiShewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12)Imported
Taxonomic identifieri637905 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
ProteomesiUP000002350 Componenti: Chromosome

Family & Domainsi

Sequence similaritiesi

Belongs to the group II decarboxylase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.

Sequencei

Sequence statusi: Complete.

D4ZAE7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMTPRRATA SEEALLRIFT VPEAPDSTLS VIEKNISQNL MGFLQESVVA
60 70 80 90 100
VEKPLSEIEL DFQQHQIPSA PQFVSDYADE MMKTLVAHSV HTSSPSFIGH
110 120 130 140 150
MTSALPYFVL PLSKMMVGLN QNLVKIETSK AFTPLERQVL GMMHHLIYSE
160 170 180 190 200
DDKFYKNWMH SANYSLGAFC SGGTIANITA LWTARNQLLK ADGDFKGVSA
210 220 230 240 250
QGLMKGLRHY GYDDLAILVS ERGHYSLAKT ADLLGIGRDN IIQVPTSSDN
260 270 280 290 300
KVDVDKMRAM AKQLDLDNIK VMAIVGVAGT TETGNIDPLD ELATLAVELN
310 320 330 340 350
CHFHVDAAWG GASLLSNKYR HLLKGIERAD SVTIDAHKQM YVPMGAGMVI
360 370 380 390 400
FKDPAFANAI KHHAEYILRK GSKDLGSQTL EGSRPGMAML VHACLQIIGR
410 420 430 440 450
DGYEILINNS LEKARYFAEL IHGQDDFQLV SEPELCLLTY RYVPKSVQEA
460 470 480 490 500
MQETRESGNT EKLIEFNSLL DGLTKFVQKR QREQGTSFVS RTRINPESRA
510 520 530 540 550
SLNIQSVVFR VVLANPLTTR EILQQVLAEQ IEIAQQDNEF LPQLLALASN
Length:550
Mass (Da):61,088
Last modified:June 15, 2010 - v1
Checksum:iC0C217B220F60E5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011177 Genomic DNA. Translation: BAJ02992.1.
RefSeqiWP_013052291.1. NC_014012.1.
YP_003557770.1. NC_014012.1.

Genome annotation databases

EnsemblBacteriaiBAJ02992; BAJ02992; SVI_3021.
KEGGisvo:SVI_3021.
PATRICi35462233. VBISheVio92117_2910.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP011177 Genomic DNA. Translation: BAJ02992.1.
RefSeqiWP_013052291.1. NC_014012.1.
YP_003557770.1. NC_014012.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAJ02992; BAJ02992; SVI_3021.
KEGGisvo:SVI_3021.
PATRICi35462233. VBISheVio92117_2910.

Phylogenomic databases

HOGENOMiHOG000282553.
KOiK01580.
OMAiALGAFCS.

Enzyme and pathway databases

BioCyciSVIO637905:GCRO-3126-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProiIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamiPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
TIGRFAMsiTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments."
    Aono E., Baba T., Ara T., Nishi T., Nakamichi T., Inamoto E., Toyonaga H., Hasegawa M., Takai Y., Okumura Y., Baba M., Tomita M., Kato C., Oshima T., Nakasone K., Mori H.
    Mol. Biosyst. 6:1216-1226(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: JCM 10179 / CIP 106290 / LMG 19151 / DSS12Imported.

Entry informationi

Entry nameiD4ZAE7_SHEVD
AccessioniPrimary (citable) accession number: D4ZAE7
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 27, 2015
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.