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D4ZAE7 (D4ZAE7_SHEVD) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 21. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Glutamate decarboxylase, putative EMBL BAJ02992.1
Gene names
Ordered Locus Names:SVI_3021 EMBL BAJ02992.1
OrganismShewanella violacea (strain JCM 10179 / CIP 106290 / LMG 19151 / DSS12) [Complete proteome] [HAMAP] EMBL BAJ02992.1
Taxonomic identifier637905 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Alteromonadales › Shewanellaceae › Shewanella ›

Protein attributes

Sequence length550 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Cofactor

Pyridoxal phosphate By similarity. RuleBase RU000382

Sequence similarities

Belongs to the group II decarboxylase family. RuleBase RU000382

Ontologies

Keywords
   LigandPyridoxal phosphate RuleBase RU000382
   Molecular functionLyase RuleBase RU000382
   Technical termComplete proteome
Gene Ontology (GO)
   Biological_processcarboxylic acid metabolic process

Inferred from electronic annotation. Source: InterPro

   Molecular_functioncarboxy-lyase activity

Inferred from electronic annotation. Source: InterPro

pyridoxal phosphate binding

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D4ZAE7 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: C0C217B220F60E5E

FASTA55061,088
        10         20         30         40         50         60 
MSMTPRRATA SEEALLRIFT VPEAPDSTLS VIEKNISQNL MGFLQESVVA VEKPLSEIEL 

        70         80         90        100        110        120 
DFQQHQIPSA PQFVSDYADE MMKTLVAHSV HTSSPSFIGH MTSALPYFVL PLSKMMVGLN 

       130        140        150        160        170        180 
QNLVKIETSK AFTPLERQVL GMMHHLIYSE DDKFYKNWMH SANYSLGAFC SGGTIANITA 

       190        200        210        220        230        240 
LWTARNQLLK ADGDFKGVSA QGLMKGLRHY GYDDLAILVS ERGHYSLAKT ADLLGIGRDN 

       250        260        270        280        290        300 
IIQVPTSSDN KVDVDKMRAM AKQLDLDNIK VMAIVGVAGT TETGNIDPLD ELATLAVELN 

       310        320        330        340        350        360 
CHFHVDAAWG GASLLSNKYR HLLKGIERAD SVTIDAHKQM YVPMGAGMVI FKDPAFANAI 

       370        380        390        400        410        420 
KHHAEYILRK GSKDLGSQTL EGSRPGMAML VHACLQIIGR DGYEILINNS LEKARYFAEL 

       430        440        450        460        470        480 
IHGQDDFQLV SEPELCLLTY RYVPKSVQEA MQETRESGNT EKLIEFNSLL DGLTKFVQKR 

       490        500        510        520        530        540 
QREQGTSFVS RTRINPESRA SLNIQSVVFR VVLANPLTTR EILQQVLAEQ IEIAQQDNEF 

       550 
LPQLLALASN

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References

[1]"Complete genome sequence and comparative analysis of Shewanella violacea, a psychrophilic and piezophilic bacterium from deep sea floor sediments."
Aono E., Baba T., Ara T., Nishi T., Nakamichi T., Inamoto E., Toyonaga H., Hasegawa M., Takai Y., Okumura Y., Baba M., Tomita M., Kato C., Oshima T., Nakasone K., Mori H.
Mol. Biosyst. 6:1216-1226(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: JCM 10179 / CIP 106290 / LMG 19151 / DSS12.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AP011177 Genomic DNA. Translation: BAJ02992.1.
RefSeqYP_003557770.1. NC_014012.1.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAJ02992; BAJ02992; SVI_3021.
GeneID8968517.
KEGGsvo:SVI_3021.
PATRIC35462233. VBISheVio92117_2910.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000282553.
KOK01580.
OMACHFHVDA.

Enzyme and pathway databases

BioCycSVIO637905:GCRO-3126-MONOMER.

Family and domain databases

Gene3D3.40.640.10. 1 hit.
3.90.1150.10. 1 hit.
InterProIPR022517. Asp_decarboxylase_pyridox.
IPR002129. PyrdxlP-dep_de-COase.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PfamPF00282. Pyridoxal_deC. 1 hit.
[Graphical view]
SUPFAMSSF53383. PyrdxlP-dep_Trfase_major. 1 hit.
TIGRFAMsTIGR03799. NOD_PanD_pyr. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD4ZAE7_SHEVD
AccessionPrimary (citable) accession number: D4ZAE7
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: May 29, 2013
This is version 21 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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