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D4Z6G0

- D4Z6G0_SPHJU

UniProt

D4Z6G0 - D4Z6G0_SPHJU

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Protein

Phosphoenolpyruvate carboxylase

Gene

ppc

Organism
Sphingobium japonicum (strain NBRC 101211 / UT26S)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi

Functioni

Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.UniRule annotationSAAS annotation

Catalytic activityi

Phosphate + oxaloacetate = H2O + phosphoenolpyruvate + HCO3-.UniRule annotationSAAS annotation

Cofactori

Note: Magnesium.UniRule annotationSAAS annotation

Sites

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifierActions
Active sitei143 – 1431UniRule annotation
Active sitei572 – 5721UniRule annotation

GO - Molecular functioni

  1. magnesium ion binding Source: UniProtKB-HAMAP
  2. phosphoenolpyruvate carboxylase activity Source: UniProtKB-HAMAP

GO - Biological processi

  1. carbon fixation Source: UniProtKB-HAMAP
  2. oxaloacetate metabolic process Source: UniProtKB-HAMAP
  3. tricarboxylic acid cycle Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LyaseUniRule annotationSAAS annotation

Keywords - Biological processi

Carbon dioxide fixationUniRule annotationSAAS annotation

Keywords - Ligandi

MagnesiumUniRule annotationSAAS annotation, PyruvateImported

Enzyme and pathway databases

BioCyciSJAP452662:GHEL-3413-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Phosphoenolpyruvate carboxylaseUniRule annotation (EC:4.1.1.31UniRule annotation)
Short name:
PEPCUniRule annotation
Short name:
PEPCaseUniRule annotation
Gene namesi
Name:ppcUniRule annotationImported
Ordered Locus Names:SJA_C1-33580Imported
OrganismiSphingobium japonicum (strain NBRC 101211 / UT26S)Imported
Taxonomic identifieri452662 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007753: Chromosome 1

Interactioni

Subunit structurei

Homotetramer.UniRule annotation

Family & Domainsi

Sequence similaritiesi

Belongs to the PEPCase type 1 family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000238647.
KOiK01595.

Family and domain databases

HAMAPiMF_00595. PEPcase_type1.
InterProiIPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view]
PfamiPF00311. PEPcase. 1 hit.
[Graphical view]
PRINTSiPR00150. PEPCARBXLASE.
SUPFAMiSSF51621. SSF51621. 1 hit.
PROSITEiPS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4Z6G0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MQHRSIMATL ASSSVPAITQ NPDIRYLGRL LGDVIRAYGG EKIYKQTEYI
60 70 80 90 100
RSASVDRARG LHGADVVDTG LDALNLDDTL SFVRGFMLFS MLANLAEDRQ
110 120 130 140 150
GVAAEPGADV ASAVEKLQSH GIGRQAVLDL LSHALIVPVL TAHPTEVRRK
160 170 180 190 200
SMIDHKNRIA DLMLLKDGGR TETDEGENLD EAIFRQIALL WQTRPLRREK
210 220 230 240 250
LFVADEIENV LAYFRDVFLP VLPALYARWE RVLGARPQSF LRVGNWIGGD
260 270 280 290 300
RDGNPFVQAP QLRLALAKGC EAALGFYMDA LHALGAELSL STELAHVPQA
310 320 330 340 350
VLDLADASGD VSPSRQDEPY RRAISGIYAR LAATHRSLVG KAAPRPSALK
360 370 380 390 400
GEPYASPADL RRDLVTVAQG LASEGNGALA TGGALGRLIR AVETFGFHLA
410 420 430 440 450
TLDMRQNSDV HQDVVAELLK VAGVEADYAG LDEYARIALL RRELANNRPL
460 470 480 490 500
GTPFFEYSER TASELAIVHA AAEAHRIYGP QCITHYIISK AESVSDLLEV
510 520 530 540 550
NIILKEAGLW RAGADGAPPQ AAIMAVPLFE TIADLEAAPK IMAAYFGLPE
560 570 580 590 600
VGGVVRERGH QEVMIGYSDS NKDGGYITST WGLFQASKAL APVFAEAGTA
610 620 630 640 650
MQLFHGRGGA VGRGGGSSFA AIQAQPKGTV QGRIRITEQG EVIAAKFGTR
660 670 680 690 700
DVAMTNLEAT TSATLLASLE PEVLSDRDAA RFAAAMDQLS KTAFAAYRDL
710 720 730 740 750
VYGTDGFKEF FRQLTPIQEI SGLKIGSRPA SRTKSTRIED LRAIPWVFSW
760 770 780 790 800
AQARVMLPGW YGVGHALSAF EDKALLADMA QHWSFLQSAL ANLEMVLAKS
810 820 830 840 850
DLGIAAHYLP LVEDQARGAE IFDRIRGGWD MTHDGLLAAT GQSRLLERNP
860 870 880 890 900
KLDTSIRLRL PYIEPLNLLQ VELMKRHRSG EDDPRIKEGI ELSINAIATA

LRNSG
Length:905
Mass (Da):98,312
Last modified:June 15, 2010 - v1
Checksum:i40AC1366128B90F8
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010803 Genomic DNA. Translation: BAI98192.1.
RefSeqiYP_003546804.1. NC_014006.1.

Genome annotation databases

EnsemblBacteriaiBAI98192; BAI98192; SJA_C1-33580.
GeneIDi8956626.
KEGGisjp:SJA_C1-33580.
PATRICi35438764. VBISphJap147895_3152.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010803 Genomic DNA. Translation: BAI98192.1 .
RefSeqi YP_003546804.1. NC_014006.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAI98192 ; BAI98192 ; SJA_C1-33580 .
GeneIDi 8956626.
KEGGi sjp:SJA_C1-33580.
PATRICi 35438764. VBISphJap147895_3152.

Phylogenomic databases

HOGENOMi HOG000238647.
KOi K01595.

Enzyme and pathway databases

BioCyci SJAP452662:GHEL-3413-MONOMER.

Family and domain databases

HAMAPi MF_00595. PEPcase_type1.
InterProi IPR021135. PEP_COase.
IPR018129. PEP_COase_AS.
IPR022805. PEP_COase_bac/pln-type.
IPR015813. Pyrv/PenolPyrv_Kinase-like_dom.
[Graphical view ]
Pfami PF00311. PEPcase. 1 hit.
[Graphical view ]
PRINTSi PR00150. PEPCARBXLASE.
SUPFAMi SSF51621. SSF51621. 1 hit.
PROSITEi PS00781. PEPCASE_1. 1 hit.
PS00393. PEPCASE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26."
    Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A., Fukui S., Fujita N., Tsuda M.
    J. Bacteriol. 192:5852-5853(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 101211 / UT26SImported.

Entry informationi

Entry nameiD4Z6G0_SPHJU
AccessioniPrimary (citable) accession number: D4Z6G0
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: November 26, 2014
This is version 31 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3