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D4Z1H5 (D4Z1H5_SPHJU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length193 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + thymidine = ADP + thymidine 5'-phosphate. HAMAP-Rule MF_00124 SAAS SAAS020634

Subunit structure

Homotetramer By similarity. HAMAP-Rule MF_00124 SAAS SAAS020633

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00124 SAAS SAAS020633.

Sequence similarities

Belongs to the thymidine kinase family. RuleBase RU004165 HAMAP-Rule MF_00124

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Nucleotide binding9 – 168ATP By similarity HAMAP-Rule MF_00124
Nucleotide binding87 – 904ATP By similarity HAMAP-Rule MF_00124

Sites

Active site881Proton acceptor By similarity HAMAP-Rule MF_00124
Metal binding1451Zinc By similarity HAMAP-Rule MF_00124
Metal binding1471Zinc By similarity HAMAP-Rule MF_00124
Metal binding1821Zinc By similarity HAMAP-Rule MF_00124
Metal binding1851Zinc By similarity HAMAP-Rule MF_00124

Sequences

Sequence LengthMass (Da)Tools
D4Z1H5 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: BEA66C9C299EAF42

FASTA19321,575
        10         20         30         40         50         60 
MAKLYFYYSS MNAGKSTTLL QSSFNYRERG METMLWTAAI DDRYERGLIV SRIGLEAKAH 

        70         80         90        100        110        120 
LFDAATDLFA PISAQHARRP LSCVLVDEAQ FLNAAQVWQL AAVADRLAIP VLCYGIRTDF 

       130        140        150        160        170        180 
QGQLFEGSAA LLGLADTLTE IKTICECGRK ATMNLRVDGE GRPIREGEQT EIGGNDRYVA 

       190 
LCRRHFVEKR SAR 

« Hide

References

[1]"Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26."
Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A., Fukui S., Fujita N., Tsuda M.
J. Bacteriol. 192:5852-5853(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 101211 / UT26S.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP010803 Genomic DNA. Translation: BAI96457.1.
RefSeqYP_003545069.1. NC_014006.1.

3D structure databases

ProteinModelPortalD4Z1H5.
ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAI96457; BAI96457; SJA_C1-16230.
GeneID8954346.
KEGGsjp:SJA_C1-16230.
PATRIC35435485. VBISphJap147895_1544.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000076391.
KOK00857.

Enzyme and pathway databases

BioCycSJAP452662:GHEL-1646-MONOMER.

Family and domain databases

HAMAPMF_00124. Thymidine_kinase.
InterProIPR027417. P-loop_NTPase.
IPR001267. Thymidine_kinase.
IPR020633. Thymidine_kinase_CS.
IPR020634. Thymidine_kinase_subgr.
[Graphical view]
PANTHERPTHR11441. PTHR11441. 1 hit.
PfamPF00265. TK. 1 hit.
[Graphical view]
PIRSFPIRSF035805. TK_cell. 1 hit.
SUPFAMSSF52540. SSF52540. 1 hit.
PROSITEPS00603. TK_CELLULAR_TYPE. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD4Z1H5_SPHJU
AccessionPrimary (citable) accession number: D4Z1H5
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 16, 2014
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)