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D4Z0J2

- D4Z0J2_SPHJU

UniProt

D4Z0J2 - D4Z0J2_SPHJU

Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Sphingobium japonicum (strain NBRC 101211 / UT26S)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 26 (01 Oct 2014)
      Sequence version 1 (15 Jun 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. ATP binding Source: InterPro
    2. DNA ligase (ATP) activity Source: UniProtKB-EC
    3. DNA primase activity Source: InterPro

    GO - Biological processi

    1. DNA recombination Source: InterPro
    2. DNA repair Source: InterPro

    Keywords - Molecular functioni

    LigaseImported

    Enzyme and pathway databases

    BioCyciSJAP452662:GHEL-1307-MONOMER.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
    Gene namesi
    Name:ligImported
    Ordered Locus Names:SJA_C1-12900Imported
    OrganismiSphingobium japonicum (strain NBRC 101211 / UT26S)Imported
    Taxonomic identifieri452662 [NCBI]
    Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
    ProteomesiUP000007753: Chromosome 1

    Family & Domainsi

    Phylogenomic databases

    HOGENOMiHOG000222509.
    KOiK01971.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    InterProiIPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4Z0J2-1 [UniParc]FASTAAdd to Basket

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    MADADPLSAY NRKRDFSRTR EPAGRRGRRQ GNGFIVQKHD ATRLHYDFRL    50
    EMDGVLKSWA VTRGPSIDPA DKRLAVRTED HPLSYATFEG TIPKGEYGGG 100
    TVMLWDEGTW EPVPGKSASD LEKGHLHFIL HGERMRGEWL LIRLKPRGRE 150
    KRENWLLRKI EDAHAGSADD LIARNLTSIR SGRTMAEIAA GAPAISLKGK 200
    KGKAFDAAMA QADRAVPAKR RARAGSDRPP PFQPPQLATL VDAVPTGNGW 250
    MHEIKYDGYR CLVSASGGKV RIFTRSGLDW TDRFAPLPAE IAAMNLPGAL 300
    IDGEVVALGS DGNPDFSTLQ QLLKGEGKAA LHLFAFDLLQ LDGQDLTAMP 350
    NIGRKEKLAA LLGEGAAHVH VGDHVVGAGE RLFQAMCGAG QEGIISKRAD 400
    APYRGARTKN WLKVKCTRRQ EFVIVGWTLS GASGRSIRNL LLGQREGEGL 450
    VYAGKVGTGF NAANSAGLVA ALGKRGRKTA ALSVPRSESR GAQWVRPDLV 500
    AEIAFAEFTA ENIVRHASFL GLREDKAARE VRREEAMPTP EAQSSIQISN 550
    PDRLIFPEAK ITKGELAEYY ARMGAAMLPW IARRPISLVR CPQGRAKKCF 600
    FQKHDSGSFG DHVKHVPIRE KEGNEEDYLY IEDSDGLLAC VQMGAIEFHG 650
    WGSGVADVER PDRMIFDLDP DEGLDFEDVK KAARDIRRAL EDMGLASFAM 700
    LSGGKGIHVV VPLTPQAQWP EVKDFADRFA RALAAQEPDR FTATMSKAKR 750
    KGRIFIDWLR NQRGATAVLP YVVRARELAS VAAPVTWEEL DGIESAAHFT 800
    VKDAALLLDR ASSRDLRGWG EAHQPLPAH 829
    Length:829
    Mass (Da):90,983
    Last modified:June 15, 2010 - v1
    Checksum:i4280DEF3684BFB42
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010803 Genomic DNA. Translation: BAI96124.1.
    RefSeqiWP_013039697.1. NC_014006.1.
    YP_003544736.1. NC_014006.1.

    Genome annotation databases

    EnsemblBacteriaiBAI96124; BAI96124; SJA_C1-12900.
    GeneIDi8954143.
    KEGGisjp:SJA_C1-12900.
    PATRICi35434833. VBISphJap147895_1224.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AP010803 Genomic DNA. Translation: BAI96124.1 .
    RefSeqi WP_013039697.1. NC_014006.1.
    YP_003544736.1. NC_014006.1.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    EnsemblBacteriai BAI96124 ; BAI96124 ; SJA_C1-12900 .
    GeneIDi 8954143.
    KEGGi sjp:SJA_C1-12900.
    PATRICi 35434833. VBISphJap147895_1224.

    Phylogenomic databases

    HOGENOMi HOG000222509.
    KOi K01971.

    Enzyme and pathway databases

    BioCyci SJAP452662:GHEL-1307-MONOMER.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    InterProi IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR014146. DNA_pol_LigD_ligase_dom.
    IPR002755. DNA_primase_S.
    IPR014144. LigD_PE_domain.
    IPR014145. LigD_pol.
    IPR012340. NA-bd_OB-fold.
    IPR014143. NHEJ_ligase_prk.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF01896. DNA_primase_S. 1 hit.
    PF13298. LigD_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
    TIGR02778. ligD_pol. 1 hit.
    TIGR02779. NHEJ_ligase_lig. 1 hit.
    TIGR02776. NHEJ_ligase_prk. 1 hit.
    PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26."
      Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A., Fukui S., Fujita N., Tsuda M.
      J. Bacteriol. 192:5852-5853(2010) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: NBRC 101211 / UT26SImported.

    Entry informationi

    Entry nameiD4Z0J2_SPHJU
    AccessioniPrimary (citable) accession number: D4Z0J2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: June 15, 2010
    Last sequence update: June 15, 2010
    Last modified: October 1, 2014
    This is version 26 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3