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D4Z0J2 (D4Z0J2_SPHJU) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names
EC=6.5.1.1 EMBL BAI96124.1
Gene names
Name:lig EMBL BAI96124.1
Ordered Locus Names:SJA_C1-12900 EMBL BAI96124.1
OrganismSphingobium japonicum (strain NBRC 101211 / UT26S) [Complete proteome] [HAMAP] EMBL BAI96124.1
Taxonomic identifier452662 [NCBI]
Taxonomic lineageBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium

Protein attributes

Sequence length829 AA.
Sequence statusComplete.
Protein existencePredicted

Ontologies

Sequences

Sequence LengthMass (Da)Tools
D4Z0J2 [UniParc].

Last modified June 15, 2010. Version 1.
Checksum: 4280DEF3684BFB42

FASTA82990,983
        10         20         30         40         50         60 
MADADPLSAY NRKRDFSRTR EPAGRRGRRQ GNGFIVQKHD ATRLHYDFRL EMDGVLKSWA 

        70         80         90        100        110        120 
VTRGPSIDPA DKRLAVRTED HPLSYATFEG TIPKGEYGGG TVMLWDEGTW EPVPGKSASD 

       130        140        150        160        170        180 
LEKGHLHFIL HGERMRGEWL LIRLKPRGRE KRENWLLRKI EDAHAGSADD LIARNLTSIR 

       190        200        210        220        230        240 
SGRTMAEIAA GAPAISLKGK KGKAFDAAMA QADRAVPAKR RARAGSDRPP PFQPPQLATL 

       250        260        270        280        290        300 
VDAVPTGNGW MHEIKYDGYR CLVSASGGKV RIFTRSGLDW TDRFAPLPAE IAAMNLPGAL 

       310        320        330        340        350        360 
IDGEVVALGS DGNPDFSTLQ QLLKGEGKAA LHLFAFDLLQ LDGQDLTAMP NIGRKEKLAA 

       370        380        390        400        410        420 
LLGEGAAHVH VGDHVVGAGE RLFQAMCGAG QEGIISKRAD APYRGARTKN WLKVKCTRRQ 

       430        440        450        460        470        480 
EFVIVGWTLS GASGRSIRNL LLGQREGEGL VYAGKVGTGF NAANSAGLVA ALGKRGRKTA 

       490        500        510        520        530        540 
ALSVPRSESR GAQWVRPDLV AEIAFAEFTA ENIVRHASFL GLREDKAARE VRREEAMPTP 

       550        560        570        580        590        600 
EAQSSIQISN PDRLIFPEAK ITKGELAEYY ARMGAAMLPW IARRPISLVR CPQGRAKKCF 

       610        620        630        640        650        660 
FQKHDSGSFG DHVKHVPIRE KEGNEEDYLY IEDSDGLLAC VQMGAIEFHG WGSGVADVER 

       670        680        690        700        710        720 
PDRMIFDLDP DEGLDFEDVK KAARDIRRAL EDMGLASFAM LSGGKGIHVV VPLTPQAQWP 

       730        740        750        760        770        780 
EVKDFADRFA RALAAQEPDR FTATMSKAKR KGRIFIDWLR NQRGATAVLP YVVRARELAS 

       790        800        810        820 
VAAPVTWEEL DGIESAAHFT VKDAALLLDR ASSRDLRGWG EAHQPLPAH 

« Hide

References

[1]"Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26."
Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A., Fukui S., Fujita N., Tsuda M.
J. Bacteriol. 192:5852-5853(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: NBRC 101211 / UT26S.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AP010803 Genomic DNA. Translation: BAI96124.1.
RefSeqYP_003544736.1. NC_014006.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaBAI96124; BAI96124; SJA_C1-12900.
GeneID8954143.
KEGGsjp:SJA_C1-12900.
PATRIC35434833. VBISphJap147895_1224.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000222509.
KOK01971.

Enzyme and pathway databases

BioCycSJAP452662:GHEL-1307-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
InterProIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMSSF50249. SSF50249. 1 hit.
TIGRFAMsTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD4Z0J2_SPHJU
AccessionPrimary (citable) accession number: D4Z0J2
Entry history
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 16, 2014
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)