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D4Z0J2

- D4Z0J2_SPHJU

UniProt

D4Z0J2 - D4Z0J2_SPHJU

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Protein
Submitted name: ATP-dependent DNA ligase
Gene
lig, SJA_C1-12900
Organism
Sphingobium japonicum (strain NBRC 101211 / UT26S)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSJAP452662:GHEL-1307-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligImported
Ordered Locus Names:SJA_C1-12900Imported
OrganismiSphingobium japonicum (strain NBRC 101211 / UT26S)Imported
Taxonomic identifieri452662 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007753: Chromosome 1

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4Z0J2-1 [UniParc]FASTAAdd to Basket

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MADADPLSAY NRKRDFSRTR EPAGRRGRRQ GNGFIVQKHD ATRLHYDFRL    50
EMDGVLKSWA VTRGPSIDPA DKRLAVRTED HPLSYATFEG TIPKGEYGGG 100
TVMLWDEGTW EPVPGKSASD LEKGHLHFIL HGERMRGEWL LIRLKPRGRE 150
KRENWLLRKI EDAHAGSADD LIARNLTSIR SGRTMAEIAA GAPAISLKGK 200
KGKAFDAAMA QADRAVPAKR RARAGSDRPP PFQPPQLATL VDAVPTGNGW 250
MHEIKYDGYR CLVSASGGKV RIFTRSGLDW TDRFAPLPAE IAAMNLPGAL 300
IDGEVVALGS DGNPDFSTLQ QLLKGEGKAA LHLFAFDLLQ LDGQDLTAMP 350
NIGRKEKLAA LLGEGAAHVH VGDHVVGAGE RLFQAMCGAG QEGIISKRAD 400
APYRGARTKN WLKVKCTRRQ EFVIVGWTLS GASGRSIRNL LLGQREGEGL 450
VYAGKVGTGF NAANSAGLVA ALGKRGRKTA ALSVPRSESR GAQWVRPDLV 500
AEIAFAEFTA ENIVRHASFL GLREDKAARE VRREEAMPTP EAQSSIQISN 550
PDRLIFPEAK ITKGELAEYY ARMGAAMLPW IARRPISLVR CPQGRAKKCF 600
FQKHDSGSFG DHVKHVPIRE KEGNEEDYLY IEDSDGLLAC VQMGAIEFHG 650
WGSGVADVER PDRMIFDLDP DEGLDFEDVK KAARDIRRAL EDMGLASFAM 700
LSGGKGIHVV VPLTPQAQWP EVKDFADRFA RALAAQEPDR FTATMSKAKR 750
KGRIFIDWLR NQRGATAVLP YVVRARELAS VAAPVTWEEL DGIESAAHFT 800
VKDAALLLDR ASSRDLRGWG EAHQPLPAH 829
Length:829
Mass (Da):90,983
Last modified:June 15, 2010 - v1
Checksum:i4280DEF3684BFB42
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010803 Genomic DNA. Translation: BAI96124.1.
RefSeqiWP_013039697.1. NC_014006.1.
YP_003544736.1. NC_014006.1.

Genome annotation databases

EnsemblBacteriaiBAI96124; BAI96124; SJA_C1-12900.
GeneIDi8954143.
KEGGisjp:SJA_C1-12900.
PATRICi35434833. VBISphJap147895_1224.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AP010803 Genomic DNA. Translation: BAI96124.1 .
RefSeqi WP_013039697.1. NC_014006.1.
YP_003544736.1. NC_014006.1.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai BAI96124 ; BAI96124 ; SJA_C1-12900 .
GeneIDi 8954143.
KEGGi sjp:SJA_C1-12900.
PATRICi 35434833. VBISphJap147895_1224.

Phylogenomic databases

HOGENOMi HOG000222509.
KOi K01971.

Enzyme and pathway databases

BioCyci SJAP452662:GHEL-1307-MONOMER.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
InterProi IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view ]
SUPFAMi SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEi PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. "Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26."
    Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A., Fukui S., Fujita N., Tsuda M.
    J. Bacteriol. 192:5852-5853(2010) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 101211 / UT26S.

Entry informationi

Entry nameiD4Z0J2_SPHJU
AccessioniPrimary (citable) accession number: D4Z0J2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: September 3, 2014
This is version 25 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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