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Protein
Submitted name:

ATP-dependent DNA ligase

Gene

lig

Organism
Sphingobium japonicum (strain NBRC 101211 / UT26S)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

  1. ATP binding Source: InterPro
  2. DNA ligase (ATP) activity Source: UniProtKB-EC
  3. DNA primase activity Source: InterPro

GO - Biological processi

  1. DNA recombination Source: InterPro
  2. DNA repair Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

LigaseImported

Enzyme and pathway databases

BioCyciSJAP452662:GHEL-1307-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
ATP-dependent DNA ligaseImported (EC:6.5.1.1Imported)
Gene namesi
Name:ligImported
Ordered Locus Names:SJA_C1-12900Imported
OrganismiSphingobium japonicum (strain NBRC 101211 / UT26S)Imported
Taxonomic identifieri452662 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaSphingomonadalesSphingomonadaceaeSphingobium
ProteomesiUP000007753 Componenti: Chromosome 1

Family & Domainsi

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4Z0J2-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MADADPLSAY NRKRDFSRTR EPAGRRGRRQ GNGFIVQKHD ATRLHYDFRL
60 70 80 90 100
EMDGVLKSWA VTRGPSIDPA DKRLAVRTED HPLSYATFEG TIPKGEYGGG
110 120 130 140 150
TVMLWDEGTW EPVPGKSASD LEKGHLHFIL HGERMRGEWL LIRLKPRGRE
160 170 180 190 200
KRENWLLRKI EDAHAGSADD LIARNLTSIR SGRTMAEIAA GAPAISLKGK
210 220 230 240 250
KGKAFDAAMA QADRAVPAKR RARAGSDRPP PFQPPQLATL VDAVPTGNGW
260 270 280 290 300
MHEIKYDGYR CLVSASGGKV RIFTRSGLDW TDRFAPLPAE IAAMNLPGAL
310 320 330 340 350
IDGEVVALGS DGNPDFSTLQ QLLKGEGKAA LHLFAFDLLQ LDGQDLTAMP
360 370 380 390 400
NIGRKEKLAA LLGEGAAHVH VGDHVVGAGE RLFQAMCGAG QEGIISKRAD
410 420 430 440 450
APYRGARTKN WLKVKCTRRQ EFVIVGWTLS GASGRSIRNL LLGQREGEGL
460 470 480 490 500
VYAGKVGTGF NAANSAGLVA ALGKRGRKTA ALSVPRSESR GAQWVRPDLV
510 520 530 540 550
AEIAFAEFTA ENIVRHASFL GLREDKAARE VRREEAMPTP EAQSSIQISN
560 570 580 590 600
PDRLIFPEAK ITKGELAEYY ARMGAAMLPW IARRPISLVR CPQGRAKKCF
610 620 630 640 650
FQKHDSGSFG DHVKHVPIRE KEGNEEDYLY IEDSDGLLAC VQMGAIEFHG
660 670 680 690 700
WGSGVADVER PDRMIFDLDP DEGLDFEDVK KAARDIRRAL EDMGLASFAM
710 720 730 740 750
LSGGKGIHVV VPLTPQAQWP EVKDFADRFA RALAAQEPDR FTATMSKAKR
760 770 780 790 800
KGRIFIDWLR NQRGATAVLP YVVRARELAS VAAPVTWEEL DGIESAAHFT
810 820
VKDAALLLDR ASSRDLRGWG EAHQPLPAH
Length:829
Mass (Da):90,983
Last modified:June 15, 2010 - v1
Checksum:i4280DEF3684BFB42
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010803 Genomic DNA. Translation: BAI96124.1.
RefSeqiYP_003544736.1. NC_014006.1.

Genome annotation databases

EnsemblBacteriaiBAI96124; BAI96124; SJA_C1-12900.
KEGGisjp:SJA_C1-12900.
PATRICi35434833. VBISphJap147895_1224.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP010803 Genomic DNA. Translation: BAI96124.1.
RefSeqiYP_003544736.1. NC_014006.1.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiBAI96124; BAI96124; SJA_C1-12900.
KEGGisjp:SJA_C1-12900.
PATRICi35434833. VBISphJap147895_1224.

Phylogenomic databases

HOGENOMiHOG000222509.
KOiK01971.

Enzyme and pathway databases

BioCyciSJAP452662:GHEL-1307-MONOMER.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
InterProiIPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR014146. DNA_pol_LigD_ligase_dom.
IPR002755. DNA_primase_S.
IPR014144. LigD_PE_domain.
IPR014145. LigD_pol.
IPR012340. NA-bd_OB-fold.
IPR014143. NHEJ_ligase_prk.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF01896. DNA_primase_S. 1 hit.
PF13298. LigD_N. 1 hit.
[Graphical view]
SUPFAMiSSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR02777. LigD_PE_dom. 1 hit.
TIGR02778. ligD_pol. 1 hit.
TIGR02779. NHEJ_ligase_lig. 1 hit.
TIGR02776. NHEJ_ligase_prk. 1 hit.
PROSITEiPS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

  1. "Complete genome sequence of the representative gamma-hexachlorocyclohexane-degrading bacterium Sphingobium japonicum UT26."
    Nagata Y., Ohtsubo Y., Endo R., Ichikawa N., Ankai A., Oguchi A., Fukui S., Fujita N., Tsuda M.
    J. Bacteriol. 192:5852-5853(2009) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: NBRC 101211 / UT26SImported.

Entry informationi

Entry nameiD4Z0J2_SPHJU
AccessioniPrimary (citable) accession number: D4Z0J2
Entry historyi
Integrated into UniProtKB/TrEMBL: June 15, 2010
Last sequence update: June 15, 2010
Last modified: April 1, 2015
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.