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D4LUP9 (D4LUP9_9FIRM) Unreviewed, UniProtKB/TrEMBL

Last modified April 3, 2013. Version 14. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
L-arabinose isomerase HAMAP-Rule MF_00519
EC=5.3.1.4 HAMAP-Rule MF_00519
Gene names
Name:araA HAMAP-Rule MF_00519
ORF Names:CK5_33060 EMBL CBL24507.1
OrganismRuminococcus obeum A2-162 EMBL CBL24507.1
Taxonomic identifier657314 [NCBI]
Taxonomic lineageBacteria › Firmicutes › Clostridia › Clostridiales › Lachnospiraceae › Blautia ›

Protein attributes

Sequence length499 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Catalyzes the conversion of L-arabinose to L-ribulose By similarity. HAMAP-Rule MF_00519 SAAS SAAS003762

Catalytic activity

L-arabinose = L-ribulose. HAMAP-Rule MF_00519 SAAS SAAS003762

Cofactor

Binds 1 manganese ion per subunit By similarity. HAMAP-Rule MF_00519 SAAS SAAS003762

Pathway

Carbohydrate degradation; L-arabinose degradation via L-ribulose; D-xylulose 5-phosphate from L-arabinose (bacterial route): step 1/3. HAMAP-Rule MF_00519 SAAS SAAS003762

Sequence similarities

Belongs to the arabinose isomerase family. HAMAP-Rule MF_00519

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Sites

Metal binding3061Manganese By similarity HAMAP-Rule MF_00519
Metal binding3351Manganese By similarity HAMAP-Rule MF_00519
Metal binding3521Manganese By similarity HAMAP-Rule MF_00519
Metal binding4511Manganese By similarity HAMAP-Rule MF_00519

Sequences

Sequence LengthMass (Da)Tools
D4LUP9 [UniParc].

Last modified May 18, 2010. Version 1.
Checksum: E4E1E31F26B88FE2

FASTA49956,408
        10         20         30         40         50         60 
MVTGKNYKFW FCTGSQDLYG DECLRKVAEH SKIIVEELNK SGALPFELVW KPTLITNELI 

        70         80         90        100        110        120 
RKTFNEANDD EECAGVITWM HTFSPAKSWI LGLKEYRKPL CHLHTQFNQE IPYDTIDMDF 

       130        140        150        160        170        180 
MNENQSAHGG REYGHIVTRM GIERKVIVGH WADKKVQERL ASWMRTAVGI MESSHIRVCR 

       190        200        210        220        230        240 
VADNMRNVAV TEGDKVEAQI KFGWEVDAYP VNEVCDYVKD VSKGDIDVLV EEYYNKYDIL 

       250        260        270        280        290        300 
LEGRNPEEFK RHVAVQAAIE IGFERFLEEK NYQAVVTHFG DLGGLQQLPG LAMQRLMEKG 

       310        320        330        340        350        360 
YGFGAEGDWK TAAMVRLMKI MTAGVKDAKG TSFMEDYTYN LVSGKEGILQ SHMLEVCPTI 

       370        380        390        400        410        420 
ADGKIGIKVC PLSMGEREDP ARLVFTSKTG PAIATSLIDL GDRFRLIIND VECKKVEKPM 

       430        440        450        460        470        480 
PKLPVGSAFW TPQPDLATGA EAWILAGGAH HTAFSYDLTA EQMGDWAAAM GIEAVYIDKD 

       490 
TTIRNFKNEL RWNELAFRK

« Hide

References

[1]"The genome sequence of Ruminococcus obeum A2-162."
metaHIT consortium -- http://www.metahit.eu/
Pajon A., Turner K., Parkhill J., Duncan S., Flint H.
Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: A2-162 EMBL CBL24507.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		FP929054 Genomic DNA. Translation: CBL24507.1.

3D structure databases

ProteinModelPortalD4LUP9.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaCBL24507; CBL24507; CK5_33060.
PATRIC43165630. VBIRumObe156199_3199.

Enzyme and pathway databases

UniPathwayUPA00145; UER00565.

Family and domain databases

HAMAPMF_00519. Arabinose_Isome.
InterProIPR024664. Ara_Isoase_C.
IPR004216. Fuc/Ara_isomerase_C.
IPR009015. Fucose_isomerase_N/cen.
IPR003762. Lara_isomerase.
[Graphical view]
PfamPF11762. Arabinose_Iso_C. 1 hit.
PF02610. Arabinose_Isome. 1 hit.
[Graphical view]
PIRSFPIRSF001478. L-ara_isomerase. 1 hit.
SUPFAMSSF50443. Fuc_isomerase_C. 1 hit.
SSF53743. Fuc_isomerase_N. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD4LUP9_9FIRM
AccessionPrimary (citable) accession number: D4LUP9
Entry history
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: April 3, 2013
This is version 14 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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