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D4L985

- D4L985_9FIRM

UniProt

D4L985 - D4L985_9FIRM

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Protein
Alpha-amylase
Gene
RBR_20490
Organism
Ruminococcus bromii L2-63
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

Endohydrolysis of (1->4)-alpha-D-glucosidic linkages in polysaccharides containing three or more (1->4)-alpha-linked D-glucose units.UniRule annotation

GO - Molecular functioni

  1. cation binding Source: InterPro
  2. hydrolase activity, acting on glycosyl bonds Source: UniProtKB-KW
Complete GO annotation...

GO - Biological processi

  1. polysaccharide catabolic process Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

GlycosidaseUniRule annotationImported, Hydrolase

Keywords - Biological processi

Carbohydrate metabolismUniRule annotation

Enzyme and pathway databases

BioCyciRBRO657321-WGS:GSU1-1737-MONOMER.

Names & Taxonomyi

Protein namesi
Recommended name:
Alpha-amylaseUniRule annotation (EC:3.2.1.1UniRule annotation)
Gene namesi
ORF Names:RBR_20490Imported
OrganismiRuminococcus bromii L2-63Imported
Taxonomic identifieri657321 [NCBI]
Taxonomic lineageiBacteriaFirmicutesClostridiaClostridialesRuminococcaceaeRuminococcus
ProteomesiUP000008954: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD4L985.

Family & Domainsi

Sequence similaritiesi

Belongs to the glycosyl hydrolase 13 family.UniRule annotation

Phylogenomic databases

KOiK01176.

Family and domain databases

Gene3Di1.10.1330.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProiIPR006046. Alpha_amylase.
IPR016134. Cellulos_enz_dockerin_1.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view]
PANTHERiPTHR10357. PTHR10357. 1 hit.
PfamiPF00128. Alpha-amylase. 1 hit.
[Graphical view]
PRINTSiPR00110. ALPHAAMYLASE.
SUPFAMiSSF51445. SSF51445. 1 hit.
SSF63446. SSF63446. 1 hit.

Sequencei

Sequence statusi: Complete.

D4L985-1 [UniParc]FASTAAdd to Basket

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MKKAKKIASL VVASALLTSS FAAITSVNAA EVDSAQTASA DSTLRDKVGD     50
GVMLHAFNWS YNTIKENLPA IAAAGYTTVQ TSPVQQPKDY STSGDVTGQW 100
WKLYQPISFH IAEESWLGTK DDLKSLCDEA DKYGIKIICD IVSNHIANAD 150
EARPDTVSNQ VKKYEPEFYK KRKTYTRTYK GDANDSSVQA VVQGHVSKCP 200
DLVTNDTAVQ GYIINLLKEC IDCGVDGFRF DAAKHIETED DGEYASDYWK 250
NITTSASSYY TQKTGDDLYI YGEILNNCGA DRSYSSYTKY INVTDNRTGD 300
AVLYNVTRGK ASTATNAKYK SGVAASNAVL WAESHDTYEG SSGSSGFSNT 350
AGISDENVVK AWAIVASRKD STALFFARPG TALMGNISTD STYKSTAVSE 400
INKFHNLFVG QSEKLGSSGD IAYVARGTSG IVLSNCKGTN ASVSISGTGL 450
ADGKYTDTVS GAEFTVANGV LTGSIGDTGV AVVYNGTTTP KAINSVESGS 500
FRGDTMTLTL SLENATSGTY CLDDSTPVKF TGTTSIRIGS DYKPGETINL 550
TVTATDGVKT SSMVYKYAKS TAQESGVYVF FNPANKKGWS APYQVYIFDE 600
TTNKGTVYKN ANWPGEAMTL DPATGYYYYE VPKSSSISAD EDDENQAASD 650
FDLSTSANTR VIISEKGGEQ YPGRTGTPIS LNGSSKAFSL TKAGTWEDTT 700
LTPTKVEIEA TDVTKGSAAE PTTKPVPPTQ PTTAQPATEP SGNAVYGDVN 750
GDGDITVVDA TLVQKHVVQL ETLSADKQIL ADVNGDNTIS VVDATLIQKY 800
IVQLKDWGRT GDVYQAEQPT TPEPTTAEPT TVKPTAQPTT KPADTYTLYF 850
KTKLGWMTSD GVSLFAYDLD TGASYQFEQD TDAYPNVYTV EVPATVSNVS 900
VYRSLSEVDE KPVGGDDGNV YNCWDATVSK TNNCITLSND EAVSTAPYVP 950
EQKPAFTLSR VYFDNSKAHY TDVYIYGWAE SGLGNAAAHM NKIAGTDIWY 1000
YDFDTPLSPG SNCFLFKDTE STWKTQTSDL TVADGKNCFR ANPGSKSGGV 1050
WVSYSE 1056
Length:1,056
Mass (Da):113,492
Last modified:May 18, 2010 - v1
Checksum:i364AB77C15E09864
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP929051 Genomic DNA. Translation: CBL16180.1.
RefSeqiWP_015524223.1. NC_021013.1.
YP_007781957.1. NC_021013.1.

Genome annotation databases

EnsemblBacteriaiCBL16180; CBL16180; RBR_20490.
GeneIDi15184239.
KEGGirbr:RBR_20490.
PATRICi43158877. VBIRumBro49525_1010.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
FP929051 Genomic DNA. Translation: CBL16180.1 .
RefSeqi WP_015524223.1. NC_021013.1.
YP_007781957.1. NC_021013.1.

3D structure databases

ProteinModelPortali D4L985.
ModBasei Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

EnsemblBacteriai CBL16180 ; CBL16180 ; RBR_20490 .
GeneIDi 15184239.
KEGGi rbr:RBR_20490.
PATRICi 43158877. VBIRumBro49525_1010.

Phylogenomic databases

KOi K01176.

Enzyme and pathway databases

BioCyci RBRO657321-WGS:GSU1-1737-MONOMER.

Family and domain databases

Gene3Di 1.10.1330.10. 1 hit.
2.60.40.1180. 1 hit.
3.20.20.80. 1 hit.
InterProi IPR006046. Alpha_amylase.
IPR016134. Cellulos_enz_dockerin_1.
IPR015902. Glyco_hydro_13.
IPR013780. Glyco_hydro_13_b.
IPR006047. Glyco_hydro_13_cat_dom.
IPR013781. Glyco_hydro_catalytic_dom.
IPR017853. Glycoside_hydrolase_SF.
[Graphical view ]
PANTHERi PTHR10357. PTHR10357. 1 hit.
Pfami PF00128. Alpha-amylase. 1 hit.
[Graphical view ]
PRINTSi PR00110. ALPHAAMYLASE.
SUPFAMi SSF51445. SSF51445. 1 hit.
SSF63446. SSF63446. 1 hit.
ProtoNeti Search...

Publicationsi

  1. "The genome sequence of Ruminococcus bromii L2-63."
    metaHIT consortium -- http://www.metahit.eu/
    Pajon A., Turner K., Parkhill J., Duncan S., Flint H.
    Submitted (MAR-2010) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: L2-63Imported.

Entry informationi

Entry nameiD4L985_9FIRM
AccessioniPrimary (citable) accession number: D4L985
Entry historyi
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: September 3, 2014
This is version 20 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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