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D4H1G7 (D4H1G7_DENA2) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 22. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Phenylalanine--tRNA ligase beta subunit HAMAP-Rule MF_00283
EC=6.1.1.20 HAMAP-Rule MF_00283
Alternative name(s):
Phenylalanyl-tRNA synthetase beta subunit HAMAP-Rule MF_00283
Gene names
Name:pheT HAMAP-Rule MF_00283
Ordered Locus Names:Dacet_1964
OrganismDenitrovibrio acetiphilus (strain DSM 12809 / N2460) [Complete proteome] [HAMAP]
Taxonomic identifier522772 [NCBI]
Taxonomic lineageBacteria › Deferribacteres › Deferribacterales › Deferribacteraceae › Denitrovibrio ›

Protein attributes

Sequence length789 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Catalytic activity

ATP + L-phenylalanine + tRNA(Phe) = AMP + diphosphate + L-phenylalanyl-tRNA(Phe). HAMAP-Rule MF_00283 SAAS SAAS002547

Cofactor

Binds 2 magnesium ions per tetramer By similarity. HAMAP-Rule MF_00283 SAAS SAAS002547

Subunit structure

Tetramer of two alpha and two beta subunits By similarity. HAMAP-Rule MF_00283 SAAS SAAS002547

Subcellular location

Cytoplasm By similarity HAMAP-Rule MF_00283.

Sequence similarities

Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. HAMAP-Rule MF_00283

Contains 1 B5 domain. HAMAP-Rule MF_00283 SAAS SAAS002547

Contains 1 FDX-ACB domain. HAMAP-Rule MF_00283 SAAS SAAS002547

Contains 1 tRNA-binding domain. HAMAP-Rule MF_00283 SAAS SAAS002547

Sequence annotation (Features)

Feature keyPosition(s)LengthDescriptionGraphical viewFeature identifier

Regions

Domain39 – 147109tRNA-binding By similarity HAMAP-Rule MF_00283
Domain399 – 47476B5 By similarity HAMAP-Rule MF_00283
Domain697 – 78993FDX-ACB By similarity HAMAP-Rule MF_00283

Sites

Metal binding4521Magnesium By similarity HAMAP-Rule MF_00283
Metal binding4581Magnesium; via carbonyl oxygen By similarity HAMAP-Rule MF_00283
Metal binding4611Magnesium By similarity HAMAP-Rule MF_00283
Metal binding4621Magnesium By similarity HAMAP-Rule MF_00283

Sequences

Sequence LengthMass (Da)Tools
D4H1G7 [UniParc].

Last modified May 18, 2010. Version 1.
Checksum: C55DE9DCA6CE7A4D

FASTA78988,312
        10         20         30         40         50         60 
MKVSLNWLNK FVEVADLDPN DIAEKLTMCG LEVDAVEHLA PLDNVVVAKV KSCVKHPDAD 

        70         80         90        100        110        120 
KLSLCEVFDG TETYQVVCGA PNVAEGQTIV FAKIGAVLPG NFKIKKAKIR GTESSGMICA 

       130        140        150        160        170        180 
EDEIGLSENH DGIMVLDDSL EPGMPVNELF GLPDTVLEIG ITPNRADCLS IIGYAHEIAA 

       190        200        210        220        230        240 
LYNRKLKKNE YKLNETDEPA GNYGGVEIKN KKACPTYLGR VIKDVTIKPS PLWMQNRLRA 

       250        260        270        280        290        300 
VGVRPISNVV DITNYVLFEY GQPLHTFDLK EIDGRIIIRN AENGEKLITL DEKERVFNEN 

       310        320        330        340        350        360 
MLLITDEKKS LAIAGVMGGE HSGISKDTKD VFLECAYFEP KQTRMTARKL GMQTDASYRY 

       370        380        390        400        410        420 
ERGIDPVNTK EMCEYAAYLI QELCGGKVCK GVLGEVNDPE PITFTVNADW INSYLGTDVS 

       430        440        450        460        470        480 
LDQMVQILDG LNMNPVVNSR DITITSPSYR VDIITRQDIA EEIARMYGYN NIPTTLPKID 

       490        500        510        520        530        540 
ADSMPMQPLL ATRRFLAQKL KTLGFNEAIN YSFMKADFLK LFDSEEKFVK LINPISEDMN 

       550        560        570        580        590        600 
TMRTQVFPGL LATIRYNLNN GFKQARFFEF ASSFIKTEDK LPEQRMLLAA ASAGDFWDVS 

       610        620        630        640        650        660 
WAAPKGTEPF FMMKGVLENL LAQYKIKAEF TKSSRHFLHP GKSAEVIVNG KSIGFIGELH 

       670        680        690        700        710        720 
PLTAEAAELR ERVTFFEIDM QDFVDNAEFV FKFESFSKFP SVYKDISVIV DTDTPTEKLT 

       730        740        750        760        770        780 
ECIKNTSKLA EDVSLYDVYT GKGIEEGKAS RTFRVLFTAG DRTLTDEETN GILQKMIDNL 


VKDYGAQLR

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Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001968 Genomic DNA. Translation: ADD68727.1.
RefSeqYP_003504683.1. NC_013943.1.

3D structure databases

ProteinModelPortalD4H1G7.
ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADD68727; ADD68727; Dacet_1964.
GeneID8876326.
KEGGdap:Dacet_1964.
PATRIC35353907. VBIDenAce54242_1959.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000292087.
KOK01890.

Enzyme and pathway databases

BioCycDACE522772:GHC2-1991-MONOMER.

Family and domain databases

Gene3D2.40.50.140. 1 hit.
3.30.56.20. 1 hit.
3.30.70.380. 1 hit.
3.50.40.10. 1 hit.
HAMAPMF_00283. Phe_tRNA_synth_beta1.
InterProIPR005146. B3/B4_tRNA-bd.
IPR009061. DNA-bd_dom_put.
IPR012340. NA-bd_OB-fold.
IPR004532. Phe-tRNA-ligase_IIc_bsu_bac.
IPR020825. Phe-tRNA_synthase_B3/B4.
IPR005121. PheS_beta_Fdx_antiC-bd.
IPR002547. tRNA-bd_dom.
IPR005147. tRNA_synthase_B5-dom.
[Graphical view]
PfamPF03483. B3_4. 1 hit.
PF03484. B5. 1 hit.
PF03147. FDX-ACB. 1 hit.
PF01588. tRNA_bind. 1 hit.
[Graphical view]
SMARTSM00873. B3_4. 1 hit.
SM00874. B5. 1 hit.
SM00896. FDX-ACB. 1 hit.
[Graphical view]
SUPFAMSSF56037. B3_4. 1 hit.
SSF54991. Fdx_AntiC_bd. 1 hit.
SSF50249. Nucleic_acid_OB. 1 hit.
SSF46955. Putativ_DNA_bind. 1 hit.
TIGRFAMsTIGR00472. pheT_bact. 1 hit.
PROSITEPS51483. B5. 1 hit.
PS51447. FDX_ACB. 1 hit.
PS50886. TRBD. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD4H1G7_DENA2
AccessionPrimary (citable) accession number: D4H1G7
Entry history
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: May 1, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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