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Protein
Submitted name:

4-aminobutyrate aminotransferase

Gene

gabT3

Organism
Haloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein inferred from homologyi

Functioni

GO - Molecular functioni

  1. 4-aminobutyrate transaminase activity Source: UniProtKB-EC
  2. pyridoxal phosphate binding Source: InterPro
Complete GO annotation...

Keywords - Molecular functioni

AminotransferaseImported, Transferase

Keywords - Ligandi

Pyridoxal phosphateUniRule annotation

Enzyme and pathway databases

BioCyciHVOL309800:GCOK-2877-MONOMER.

Names & Taxonomyi

Protein namesi
Submitted name:
4-aminobutyrate aminotransferaseImported (EC:2.6.1.19Imported)
Gene namesi
Name:gabT3Imported
Ordered Locus Names:HVO_2871Imported
ORF Names:C498_17538Imported
OrganismiHaloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii)Imported
Taxonomic identifieri309800 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloferax
ProteomesiUP000008243 Componenti: Chromosome

Structurei

3D structure databases

ProteinModelPortaliD4GXI1.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.UniRule annotation

Phylogenomic databases

HOGENOMiHOG000020206.
KOiK00823.
OMAiVWDITAE.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4GXI1-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MDRETAVPRV DSMPGEKARE WVAYHHEHAA PSTYVYDFVW DITAESEGPF
60 70 80 90 100
CTDIDGNVLL DFTSHVAAAP LGYNNPKLTD RMAEFDLVDP TKIAGQDFYV
110 120 130 140 150
SDGSAPGEER LPGPAALMDR LTDLTSHYGM DTVFLSNSGA EAVENAIKIA
160 170 180 190 200
YDHADGAKYG VTFEGAFHGR TLGALSLNRS KSVYRRKFPE ISGVLDVPFC
210 220 230 240 250
DDRTCSPETC SCGFFPDADS AVSKLRQKLH PKKGHIDADE VAYVIVEPIQ
260 270 280 290 300
GEGGYRFPSD AFVEELAAVV DDYDLTLIAD EIQTGVGRTG ELWGSDHYPL
310 320 330 340 350
EPDIITGAKG LRVGATISND GIFPDETSRL SSTWGAGDIV SSMQGVFTLE
360 370 380 390 400
AIEEYDLLDN AVARGRQFIE RMRDDAPDTV VDVRGKGLLL AVEFDTKERR
410 420 430 440 450
DAVQEAALKR GLLTLSCGYK VLRILPPLDV TAREIDLGAT MLLDAIEDVS
Length:450
Mass (Da):49,116
Last modified:May 18, 2010 - v1
Checksum:iE322F8224D84E570
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001956 Genomic DNA. Translation: ADE03288.1.
AOHU01000103 Genomic DNA. Translation: ELY25006.1.
RefSeqiWP_004044687.1. NZ_AOHU01000103.1.
YP_003536881.1. NC_013967.1.

Genome annotation databases

EnsemblBacteriaiADE03288; ADE03288; HVO_2871.
ELY25006; ELY25006; C498_17538.
GeneIDi8926726.
KEGGihvo:HVO_2871.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP001956 Genomic DNA. Translation: ADE03288.1.
AOHU01000103 Genomic DNA. Translation: ELY25006.1.
RefSeqiWP_004044687.1. NZ_AOHU01000103.1.
YP_003536881.1. NC_013967.1.

3D structure databases

ProteinModelPortaliD4GXI1.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiADE03288; ADE03288; HVO_2871.
ELY25006; ELY25006; C498_17538.
GeneIDi8926726.
KEGGihvo:HVO_2871.

Phylogenomic databases

HOGENOMiHOG000020206.
KOiK00823.
OMAiVWDITAE.

Enzyme and pathway databases

BioCyciHVOL309800:GCOK-2877-MONOMER.

Family and domain databases

Gene3Di3.40.640.10. 1 hit.
3.90.1150.10. 2 hits.
InterProiIPR005814. Aminotrans_3.
IPR015424. PyrdxlP-dep_Trfase.
IPR015421. PyrdxlP-dep_Trfase_major_sub1.
IPR015422. PyrdxlP-dep_Trfase_major_sub2.
[Graphical view]
PANTHERiPTHR11986. PTHR11986. 1 hit.
PfamiPF00202. Aminotran_3. 1 hit.
[Graphical view]
SUPFAMiSSF53383. SSF53383. 1 hit.
PROSITEiPS00600. AA_TRANSFER_CLASS_3. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon."
    Hartman A.L., Norais C., Badger J.H., Delmas S., Haldenby S., Madupu R., Robinson J., Khouri H., Ren Q., Lowe T.M., Maupin-Furlow J., Pohlschroder M., Daniels C., Pfeiffer F., Allers T., Eisen J.A.
    PLoS ONE 5:E9605-E9605(2010)
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DS2Imported.
  2. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2Imported.
  3. Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
    Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
    Cited for: NUCLEOTIDE SEQUENCE.
    Strain: DS2Imported.

Entry informationi

Entry nameiD4GXI1_HALVD
AccessioniPrimary (citable) accession number: D4GXI1
Entry historyi
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: April 29, 2015
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.