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D4GV77 (D4GV77_HALVD) Unreviewed, UniProtKB/TrEMBL

Last modified April 16, 2014. Version 29. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry infoCustomize order

Names and origin

Protein names
EC=4.1.1.39 EMBL ELY27227.1

Ribulose-bisphosphate carboxylase large subunit EMBL ADE04153.1
EC=4.1.1.39 EMBL ADE04153.1
Gene names
Name:rbcL EMBL ADE04153.1
Ordered Locus Names:HVO_0970 EMBL ADE04153.1
ORF Names:C498_13921 EMBL ELY27227.1
OrganismHaloferax volcanii (strain ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2) (Halobacterium volcanii) [Reference proteome] [HAMAP] EMBL ADE04153.1
Taxonomic identifier309800 [NCBI]
Taxonomic lineageArchaeaEuryarchaeotaHalobacteriaHalobacterialesHalobacteriaceaeHaloferax

Protein attributes

Sequence length414 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Sequence similarities

Belongs to the RuBisCO large chain family. RuleBase RU004228

Ontologies

Keywords
   Molecular functionLyase EMBL ADE04153.1
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Biological_processcarbon fixation

Inferred from electronic annotation. Source: InterPro

   Molecular_functionmagnesium ion binding

Inferred from electronic annotation. Source: InterPro

ribulose-bisphosphate carboxylase activity

Inferred from electronic annotation. Source: UniProtKB-EC

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D4GV77 [UniParc].

Last modified May 18, 2010. Version 1.
Checksum: 436AC5738813777B

FASTA41443,922
        10         20         30         40         50         60 
MGITYEDFLD LDYEPTDEDL VCTFRIDPAT GMSTEAAASR VASESSNGTW AALQTGADFT 

        70         80         90        100        110        120 
DMGATTFDID GDLIRVAYPA GLFEPGNMPQ VLSCIAGNIM GMKAVDTIRL LDCEWPESVV 

       130        140        150        160        170        180 
SAYPGPLYGS SVREEIFGVT DRPITATVPK PKVGLSTAAH AQVGYDAWVG GVDLLKDDEN 

       190        200        210        220        230        240 
LTDQAFNPFS DRLTESLSLR DDAEDETGEK KSYLINVTAD TQTMLDRVDE VAAQGGEYVM 

       250        260        270        280        290        300 
VDIITAGWAG LQTVRERTEK HGLAIHAHRA MHAAFDRLPA HGVSMRVLAQ VSRLCGVDQL 

       310        320        330        340        350        360 
HTGTAGLGKL ANEDTVGINE WLAGDLHGAT DVLPVASGGL HPGLLPDLLD ATGTNVCVQL 

       370        380        390        400        410 
GGGIHGHPDG TRAGAVALRS AIDAYVEGRA ITEAAEETPE LAVALDKWGT ETPR 

« Hide

References

« Hide 'large scale' references
[1]"The Complete Genome Sequence of Haloferax volcanii DS2, a Model Archaeon."
Hartman A.L., Norais C., Badger J.H., Delmas S., Haldenby S., Madupu R., Robinson J., Khouri H., Ren Q., Lowe T.M., Maupin-Furlow J., Pohlschroder M., Daniels C., Pfeiffer F., Allers T., Eisen J.A.
PLoS ONE 5:E9605-E9605(2010)
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DS2 EMBL ADE04153.1.
[2]"The complete genome sequence of Haloferax volcanii DS2, a model archaeon."
Hartman A.L., Norais C., Badger J.H., Delmas S., Haldenby S., Madupu R., Robinson J., Khouri H., Ren Q., Lowe T.M., Maupin-Furlow J., Pohlschroder M., Daniels C., Pfeiffer F., Allers T., Eisen J.A.
PLoS ONE 5:E9605-E9605(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: ATCC 29605 / DSM 3757 / JCM 8879 / NBRC 14742 / NCIMB 2012 / VKM B-1768 / DS2.
[3]Becker E.A., Seitzer P., Tritt A., Larsen D., Yao A., Wu D., Darling A., Eisen J.A., Facciotti M.T.
Submitted (NOV-2012) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: DS2 EMBL ELY27227.1.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
CP001956 Genomic DNA. Translation: ADE04153.1.
AOHU01000093 Genomic DNA. Translation: ELY27227.1.
RefSeqYP_003535027.1. NC_013967.1.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADE04153; ADE04153; HVO_0970.
ELY27227; ELY27227; C498_13921.
GeneID8926563.
KEGGhvo:HVO_0970.

Phylogenomic databases

HOGENOMHOG000230831.
KOK01601.
OMAHRAMHAA.

Enzyme and pathway databases

BioCycHVOL309800:GCOK-974-MONOMER.

Family and domain databases

Gene3D3.20.20.110. 1 hit.
3.30.70.150. 1 hit.
InterProIPR017712. RuBisCO_III.
IPR000685. RuBisCO_lsu_C.
IPR017443. RuBisCO_lsu_fd_N.
IPR017444. RuBisCO_lsu_N.
[Graphical view]
PfamPF00016. RuBisCO_large. 1 hit.
PF02788. RuBisCO_large_N. 1 hit.
[Graphical view]
SUPFAMSSF51649. SSF51649. 1 hit.
SSF54966. SSF54966. 1 hit.
TIGRFAMsTIGR03326. rubisco_III. 1 hit.
ProtoNetSearch...

Entry information

Entry nameD4GV77_HALVD
AccessionPrimary (citable) accession number: D4GV77
Entry history
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: April 16, 2014
This is version 29 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)