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D4GE34 (D4GE34_PANAM) Unreviewed, UniProtKB/TrEMBL

Last modified May 29, 2013. Version 17. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesRecommended name:
Ribonuclease PH HAMAP-Rule MF_00564
Short name=RNase PH HAMAP-Rule MF_00564
EC=2.7.7.56 HAMAP-Rule MF_00564
Alternative name(s):
tRNA nucleotidyltransferase HAMAP-Rule MF_00564
Gene names
Name:rph HAMAP-Rule MF_00564 EMBL ADD79076.1
Ordered Locus Names:PANA_3909
OrganismPantoea ananatis (strain LMG 20103) [Complete proteome] [HAMAP]
Taxonomic identifier706191 [NCBI]
Taxonomic lineageBacteria › Proteobacteria › Gammaproteobacteria › Enterobacteriales › Enterobacteriaceae › Pantoea ›

Protein attributes

Sequence length238 AA.
Sequence statusComplete.
Protein existenceInferred from homology

General annotation (Comments)

Function

Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates By similarity. HAMAP-Rule MF_00564 SAAS SAAS018336

Catalytic activity

tRNA(n+1) + phosphate = tRNA(n) + a nucleoside diphosphate. HAMAP-Rule MF_00564 SAAS SAAS018336

Sequence similarities

Belongs to the RNase PH family. HAMAP-Rule MF_00564

Sequences

Sequence LengthMass (Da)Tools
D4GE34 [UniParc].

Last modified May 18, 2010. Version 1.
Checksum: 2C6C255C778D183E

FASTA23825,367
        10         20         30         40         50         60 
MRPAGRSAHQ VRPVTLTRNY TKHAEGSVLV EFGETKVLCT ATVDEGVPRF LKGQGQGWVT 

        70         80         90        100        110        120 
AEYGMLPRST HSRMAREAAK GKQGGRTLEI QRLIARSLRA AVDLKVLGEY TITLDCDVIQ 

       130        140        150        160        170        180 
ADGGTRTASI TGACVALADA LNKLVASGKL KANPMKGMVA AVSVGIVNGE ALCDLEYVED 

       190        200        210        220        230 
SAAETDMNVV MMEDGRMIEV QGTAEGEPFS HEELLALLAL ARGGIEELIQ AQKAALEK

« Hide

References

[1]"Genome sequence of Pantoea ananatis LMG20103, the causative agent of Eucalyptus blight and dieback."
De Maayer P., Chan W.Y., Venter S.N., Toth I.K., Birch P.R., Joubert F., Coutinho T.A.
J. Bacteriol. 192:2936-2937(2010) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: LMG 20103.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		CP001875 Genomic DNA. Translation: ADD79076.1.
RefSeqYP_003522204.1. NC_013956.2.

3D structure databases

ModBaseSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaADD79076; ADD79076; PANA_3909.
GeneID8897821.
KEGGpam:PANA_3909.
PATRIC35389010. VBIPanAna151616_4061.

Organism-specific databases

CMRSearch...

Phylogenomic databases

HOGENOMHOG000229516.
KOK00989.
OMAMLPRATG.

Enzyme and pathway databases

BioCycPANA706191:GJNK-4016-MONOMER.

Family and domain databases

Gene3D3.30.230.70. 1 hit.
HAMAPMF_00564. RNase_PH.
InterProIPR001247. ExoRNase_PH_dom1.
IPR015847. ExoRNase_PH_dom2.
IPR027408. PNPase/RNase_PH_dom.
IPR020568. Ribosomal_S5_D2-typ_fold.
IPR002381. RNase_PH_bac-type.
IPR018336. RNase_PH_CS.
[Graphical view]
PfamPF01138. RNase_PH. 1 hit.
PF03725. RNase_PH_C. 1 hit.
[Graphical view]
SUPFAMSSF55666. 3_ExoRNase. 1 hit.
SSF54211. Ribosomal_S5_D2-typ_fold. 1 hit.
TIGRFAMsTIGR01966. RNasePH. 1 hit.
PROSITEPS01277. RIBONUCLEASE_PH. 1 hit.
[Graphical view]
ProtoNetSearch...

Entry information

Entry nameD4GE34_PANAM
AccessionPrimary (citable) accession number: D4GE34
Entry history
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: May 29, 2013
This is version 17 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
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