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D4AMF5

- D4AMF5_ARTBC

UniProt

D4AMF5 - D4AMF5_ARTBC

Protein

DNA ligase

Gene

ARB_05408

Organism
Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
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    • History
      Entry version 23 (01 Oct 2014)
      Sequence version 1 (18 May 2010)
      Previous versions | rss
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    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:ARB_05408Imported
    OrganismiArthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)Imported
    Taxonomic identifieri663331 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeOnygenalesArthrodermataceaeArthroderma
    ProteomesiUP000008866: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD4AMF5.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Belongs to the ATP-dependent DNA ligase family.UniRule annotation

    Phylogenomic databases

    KOiK10747.
    OrthoDBiEOG7TXKRG.

    Family and domain databases

    Gene3Di1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProiIPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4AMF5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGPLKKKRK VDSTGVPQNT RSIASYFRAG NKATSSQIIS TEHHRLTDEQ    50
    LARKLQKEWN KKSQDESESS TPGHRATENL QEEKLRASDE VADASSSSDK 100
    GSLADTPALT PGKENKPKGI LSLQSSSTAE DTISFSLPFD LSPLEFDPHE 150
    QKEKLQAHWD AEGGKASYAI LARAFSLVNG TQSRIKIVDI LVNLLRLIIV 200
    GDPQSLLPAV WLATNAFAPP YVPIELGLGG SAISKALKRA YGLDNQGLKA 250
    LYNKHGDAGD VAFEAKKKQS FTLRRPKPLT IRSVYDALMK IANSKGTGSQ 300
    ETKQRIVEKL LQDTRGAEES RYIVRTLVQH LRIGAVKTTI LIALARAFLY 350
    SKPPAATFPL RSRAELMSLS KEELSNIYSQ AEETIKACYA RHPNYNMIVP 400
    CLLENGVSAE LLTKCGITLH VPLLPMLGSI TRDLPQMLTR LHGRSFTCEY 450
    KYDGQRAQVH CDAAGKVSIF SRHLELMTDK YPDLVSLVPQ IRSGAVSSFI 500
    MEGEVVAVNN ETGELLPFQT LTNRAKKNVE IGSIKVNVCL FSFDLMYLNG 550
    QPLLDRTFRE RRELLRSLFV EIPNQFTWVK SIDAFPSDSD AVLNFFNDAL 600
    QVKCEGIMVK VLDDKPVDRL LQAEDTATAL GDGELLPPEE DKKQESTDTA 650
    EKQRGNRKRP LLSTYEPDKR LESWLKVKKD YSASSETLDL IPIAAWHGQG 700
    RKAKWWSPIL LAVRNPETGS LEAVTKCMSG FTDKFYEANK EKYAEGSDNI 750
    ISRPSYVEYC GEPEVWFQPQ EVWEMAFADI TLSPTYTAAI GLVSDERGLS 800
    LRFPRFLRVR EDKSIDEAST SDYLAHLWDK QAERAKVAEP RAGD 844
    Length:844
    Mass (Da):94,091
    Last modified:May 18, 2010 - v1
    Checksum:i5FC84138AEE11C9F
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ABSU01000003 Genomic DNA. Translation: EFE35366.1.
    RefSeqiXP_003016011.1. XM_003015965.1.

    Genome annotation databases

    GeneIDi9523919.
    KEGGiabe:ARB_05408.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ABSU01000003 Genomic DNA. Translation: EFE35366.1 .
    RefSeqi XP_003016011.1. XM_003015965.1.

    3D structure databases

    ProteinModelPortali D4AMF5.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9523919.
    KEGGi abe:ARB_05408.

    Phylogenomic databases

    KOi K10747.
    OrthoDBi EOG7TXKRG.

    Family and domain databases

    Gene3Di 1.10.3260.10. 1 hit.
    2.40.50.140. 1 hit.
    InterProi IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC MYA-4681 / CBS 112371Imported.

    Entry informationi

    Entry nameiD4AMF5_ARTBC
    AccessioniPrimary (citable) accession number: D4AMF5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 18, 2010
    Last sequence update: May 18, 2010
    Last modified: October 1, 2014
    This is version 23 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3