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D4AMF5

- D4AMF5_ARTBC

UniProt

D4AMF5 - D4AMF5_ARTBC

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Protein
DNA ligase
Gene
ARB_05408
Organism
Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:ARB_05408Imported
OrganismiArthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
Taxonomic identifieri663331 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeOnygenalesArthrodermataceaeArthroderma
ProteomesiUP000008866: Unassembled WGS genome

Structurei

3D structure databases

ProteinModelPortaliD4AMF5.

Family & Domainsi

Sequence similaritiesi

Belongs to the ATP-dependent DNA ligase family.UniRule annotation

Phylogenomic databases

KOiK10747.
OrthoDBiEOG7TXKRG.

Family and domain databases

Gene3Di1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProiIPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4AMF5-1 [UniParc]FASTAAdd to Basket

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MAGPLKKKRK VDSTGVPQNT RSIASYFRAG NKATSSQIIS TEHHRLTDEQ    50
LARKLQKEWN KKSQDESESS TPGHRATENL QEEKLRASDE VADASSSSDK 100
GSLADTPALT PGKENKPKGI LSLQSSSTAE DTISFSLPFD LSPLEFDPHE 150
QKEKLQAHWD AEGGKASYAI LARAFSLVNG TQSRIKIVDI LVNLLRLIIV 200
GDPQSLLPAV WLATNAFAPP YVPIELGLGG SAISKALKRA YGLDNQGLKA 250
LYNKHGDAGD VAFEAKKKQS FTLRRPKPLT IRSVYDALMK IANSKGTGSQ 300
ETKQRIVEKL LQDTRGAEES RYIVRTLVQH LRIGAVKTTI LIALARAFLY 350
SKPPAATFPL RSRAELMSLS KEELSNIYSQ AEETIKACYA RHPNYNMIVP 400
CLLENGVSAE LLTKCGITLH VPLLPMLGSI TRDLPQMLTR LHGRSFTCEY 450
KYDGQRAQVH CDAAGKVSIF SRHLELMTDK YPDLVSLVPQ IRSGAVSSFI 500
MEGEVVAVNN ETGELLPFQT LTNRAKKNVE IGSIKVNVCL FSFDLMYLNG 550
QPLLDRTFRE RRELLRSLFV EIPNQFTWVK SIDAFPSDSD AVLNFFNDAL 600
QVKCEGIMVK VLDDKPVDRL LQAEDTATAL GDGELLPPEE DKKQESTDTA 650
EKQRGNRKRP LLSTYEPDKR LESWLKVKKD YSASSETLDL IPIAAWHGQG 700
RKAKWWSPIL LAVRNPETGS LEAVTKCMSG FTDKFYEANK EKYAEGSDNI 750
ISRPSYVEYC GEPEVWFQPQ EVWEMAFADI TLSPTYTAAI GLVSDERGLS 800
LRFPRFLRVR EDKSIDEAST SDYLAHLWDK QAERAKVAEP RAGD 844
Length:844
Mass (Da):94,091
Last modified:May 18, 2010 - v1
Checksum:i5FC84138AEE11C9F
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ABSU01000003 Genomic DNA. Translation: EFE35366.1.
RefSeqiXP_003016011.1. XM_003015965.1.

Genome annotation databases

GeneIDi9523919.
KEGGiabe:ARB_05408.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ABSU01000003 Genomic DNA. Translation: EFE35366.1 .
RefSeqi XP_003016011.1. XM_003015965.1.

3D structure databases

ProteinModelPortali D4AMF5.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9523919.
KEGGi abe:ARB_05408.

Phylogenomic databases

KOi K10747.
OrthoDBi EOG7TXKRG.

Family and domain databases

Gene3Di 1.10.3260.10. 1 hit.
2.40.50.140. 1 hit.
InterProi IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC MYA-4681 / CBS 112371.

Entry informationi

Entry nameiD4AMF5_ARTBC
AccessioniPrimary (citable) accession number: D4AMF5
Entry historyi
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: November 13, 2013
This is version 22 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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