Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D4AJD4

- D4AJD4_ARTBC

UniProt

D4AJD4 - D4AJD4_ARTBC

Protein

DNA ligase

Gene

ARB_04383

Organism
Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
Status
Unreviewed - Annotation score: 2 out of 5- Protein inferred from homologyi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 25 (01 Oct 2014)
      Sequence version 1 (18 May 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Functioni

    Catalytic activityi

    ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

    GO - Molecular functioni

    1. ATP binding Source: UniProtKB-KW
    2. DNA binding Source: InterPro
    3. DNA ligase (ATP) activity Source: UniProtKB-EC

    GO - Biological processi

    1. DNA ligation involved in DNA repair Source: InterPro
    2. DNA recombination Source: UniProtKB-KW
    3. DNA replication Source: UniProtKB-KW

    Keywords - Molecular functioni

    LigaseUniRule annotation

    Keywords - Biological processi

    DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

    Keywords - Ligandi

    ATP-bindingUniRule annotation, Nucleotide-binding

    Names & Taxonomyi

    Protein namesi
    Recommended name:
    DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
    Gene namesi
    ORF Names:ARB_04383Imported
    OrganismiArthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)Imported
    Taxonomic identifieri663331 [NCBI]
    Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeOnygenalesArthrodermataceaeArthroderma
    ProteomesiUP000008866: Unassembled WGS sequence

    Structurei

    3D structure databases

    ProteinModelPortaliD4AJD4.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Sequence similaritiesi

    Phylogenomic databases

    KOiK10777.
    OrthoDBiEOG7QC84G.

    Family and domain databases

    Gene3Di2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProiIPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view]
    PfamiPF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view]
    SMARTiSM00292. BRCT. 2 hits.
    [Graphical view]
    SUPFAMiSSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsiTIGR00574. dnl1. 1 hit.
    PROSITEiPS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4AJD4-1 [UniParc]FASTAAdd to Basket

    « Hide

    MEPNPGGAIR ETERELDEKP RNHGQTLPFH DLFISLFNPL NDLKKKPAGP     50
    PAARRKAGPT GRNNLSPHEL RRNVIERFIS RWRQQVGNDF FPAFRLIVPE 100
    KDRDRAMYGL KEKAIGKLLV KVMKIDKNSE DGYNLLNWKL PGQRAATAMT 150
    GDFAGRCFEV ISKRPLRTEV GDMSIADVNS RLDDLAVASK EDAQLPILAE 200
    FYRRMNPEEM MWLIRIILRQ MKVGATERTF FEIWHPDAES LFNISSSLRR 250
    VCWELYLPSI RLEADEARVT LMQCFQPQLA QFQMHSFQKI IERMRLAEDD 300
    PEFWIEEKLD GERMQLHMET NSSIPGGKRF EFWSRKAKEY TYLYGNGFYD 350
    DNGSLTRHLK NAFADGVESI ILDGEMITWD PEQDAPVPFG TLKTAALAEQ 400
    RNPFSASGHR PLFRIFDIVY LNGKPLTRYT LRDRRRALEA SVIPVHRRFE 450
    IHPYQVGKSA SDIEPLLRKV VAEASEGLVL KNPNSPYRLN ERNDDWMKVK 500
    PDYMTEFGES LDCIVVGGYY GSGKRGGNIS SYLCGLRVDD THAEDGTNPM 550
    KCYSFCKVGG GFTAADYANI RHHTDGKWHD WDPKKPPTEY IELAGGDAQH 600
    ERPDVWIKPD DSIVVCVKAA AVTPSDQFRL GLTVRFPRFK RLRMDKDWQS 650
    ALSVQEFMDL KAGAEQEKKE KDFQVDNSRR KKTKRSKKKE LTVAGSGEPN 700
    VAYVGSKTHI FDGLSFCGLK IQALEVNYAN IFIVVMTESV KPMKKSKADL 750
    EQLIKANGGK IYQTNNAAKD TYCIADRRTV KVASLQKSGL ENVIRPCWIS 800
    DCISQNEHDI GESSILLPLE PRHMFFTKED QKEEISNNVD KYDDSFARDT 850
    SIAELTEILH KMDAISDISG EERLDIMSDL TLDGDQGSVH SDVEGWLFKN 900
    LTIFFAPCSH LSSVPGEPYV DALSIRQQLA RNITIFTGAT VTDQQKNNRI 950
    THVIVDPSAD RDPETGKAKN YTTLRSEFAT RRAIPHFVTV QWVEECWKEK 1000
    TLVDEERMYS MPAIALPGLC 1020
    Length:1,020
    Mass (Da):116,241
    Last modified:May 18, 2010 - v1
    Checksum:iE34AC539D072D3A8
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ABSU01000001 Genomic DNA. Translation: EFE36857.1.
    RefSeqiXP_003017502.1. XM_003017456.1.

    Genome annotation databases

    GeneIDi9524612.
    KEGGiabe:ARB_04383.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    ABSU01000001 Genomic DNA. Translation: EFE36857.1 .
    RefSeqi XP_003017502.1. XM_003017456.1.

    3D structure databases

    ProteinModelPortali D4AJD4.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    GeneIDi 9524612.
    KEGGi abe:ARB_04383.

    Phylogenomic databases

    KOi K10777.
    OrthoDBi EOG7QC84G.

    Family and domain databases

    Gene3Di 2.40.50.140. 1 hit.
    3.40.50.10190. 2 hits.
    InterProi IPR001357. BRCT_dom.
    IPR000977. DNA_ligase_ATP-dep.
    IPR012309. DNA_ligase_ATP-dep_C.
    IPR012310. DNA_ligase_ATP-dep_cent.
    IPR016059. DNA_ligase_ATP-dep_CS.
    IPR012308. DNA_ligase_ATP-dep_N.
    IPR012340. NA-bd_OB-fold.
    [Graphical view ]
    Pfami PF04679. DNA_ligase_A_C. 1 hit.
    PF01068. DNA_ligase_A_M. 1 hit.
    PF04675. DNA_ligase_A_N. 1 hit.
    [Graphical view ]
    SMARTi SM00292. BRCT. 2 hits.
    [Graphical view ]
    SUPFAMi SSF117018. SSF117018. 1 hit.
    SSF50249. SSF50249. 1 hit.
    SSF52113. SSF52113. 2 hits.
    TIGRFAMsi TIGR00574. dnl1. 1 hit.
    PROSITEi PS50172. BRCT. 2 hits.
    PS00697. DNA_LIGASE_A1. 1 hit.
    PS50160. DNA_LIGASE_A3. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: ATCC MYA-4681 / CBS 112371Imported.

    Entry informationi

    Entry nameiD4AJD4_ARTBC
    AccessioniPrimary (citable) accession number: D4AJD4
    Entry historyi
    Integrated into UniProtKB/TrEMBL: May 18, 2010
    Last sequence update: May 18, 2010
    Last modified: October 1, 2014
    This is version 25 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3