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D4AJD4

- D4AJD4_ARTBC

UniProt

D4AJD4 - D4AJD4_ARTBC

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Protein

DNA ligase

Gene
ARB_04383
Organism
Arthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
Status
Unreviewed - Annotation score: 2 out of 5 - Protein inferred from homologyi

Functioni

Catalytic activityi

ATP + (deoxyribonucleotide)(n) + (deoxyribonucleotide)(m) = AMP + diphosphate + (deoxyribonucleotide)(n+m).UniRule annotation

GO - Molecular functioni

  1. ATP binding Source: UniProtKB-KW
  2. DNA binding Source: InterPro
  3. DNA ligase (ATP) activity Source: UniProtKB-EC

GO - Biological processi

  1. DNA ligation involved in DNA repair Source: InterPro
  2. DNA recombination Source: UniProtKB-KW
  3. DNA replication Source: UniProtKB-KW
Complete GO annotation...

Keywords - Molecular functioni

LigaseUniRule annotation

Keywords - Biological processi

DNA damage, DNA recombinationUniRule annotation, DNA repairUniRule annotation, DNA replicationUniRule annotation

Keywords - Ligandi

ATP-bindingUniRule annotation, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
DNA ligaseUniRule annotation (EC:6.5.1.1UniRule annotation)
Gene namesi
ORF Names:ARB_04383Imported
OrganismiArthroderma benhamiae (strain ATCC MYA-4681 / CBS 112371) (Trichophyton mentagrophytes)
Taxonomic identifieri663331 [NCBI]
Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaPezizomycotinaEurotiomycetesEurotiomycetidaeOnygenalesArthrodermataceaeArthroderma
ProteomesiUP000008866: Unassembled WGS genome

Structurei

3D structure databases

ProteinModelPortaliD4AJD4.

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

KOiK10777.
OrthoDBiEOG7QC84G.

Family and domain databases

Gene3Di2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProiIPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view]
PfamiPF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view]
SMARTiSM00292. BRCT. 2 hits.
[Graphical view]
SUPFAMiSSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsiTIGR00574. dnl1. 1 hit.
PROSITEiPS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4AJD4-1 [UniParc]FASTAAdd to Basket

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MEPNPGGAIR ETERELDEKP RNHGQTLPFH DLFISLFNPL NDLKKKPAGP     50
PAARRKAGPT GRNNLSPHEL RRNVIERFIS RWRQQVGNDF FPAFRLIVPE 100
KDRDRAMYGL KEKAIGKLLV KVMKIDKNSE DGYNLLNWKL PGQRAATAMT 150
GDFAGRCFEV ISKRPLRTEV GDMSIADVNS RLDDLAVASK EDAQLPILAE 200
FYRRMNPEEM MWLIRIILRQ MKVGATERTF FEIWHPDAES LFNISSSLRR 250
VCWELYLPSI RLEADEARVT LMQCFQPQLA QFQMHSFQKI IERMRLAEDD 300
PEFWIEEKLD GERMQLHMET NSSIPGGKRF EFWSRKAKEY TYLYGNGFYD 350
DNGSLTRHLK NAFADGVESI ILDGEMITWD PEQDAPVPFG TLKTAALAEQ 400
RNPFSASGHR PLFRIFDIVY LNGKPLTRYT LRDRRRALEA SVIPVHRRFE 450
IHPYQVGKSA SDIEPLLRKV VAEASEGLVL KNPNSPYRLN ERNDDWMKVK 500
PDYMTEFGES LDCIVVGGYY GSGKRGGNIS SYLCGLRVDD THAEDGTNPM 550
KCYSFCKVGG GFTAADYANI RHHTDGKWHD WDPKKPPTEY IELAGGDAQH 600
ERPDVWIKPD DSIVVCVKAA AVTPSDQFRL GLTVRFPRFK RLRMDKDWQS 650
ALSVQEFMDL KAGAEQEKKE KDFQVDNSRR KKTKRSKKKE LTVAGSGEPN 700
VAYVGSKTHI FDGLSFCGLK IQALEVNYAN IFIVVMTESV KPMKKSKADL 750
EQLIKANGGK IYQTNNAAKD TYCIADRRTV KVASLQKSGL ENVIRPCWIS 800
DCISQNEHDI GESSILLPLE PRHMFFTKED QKEEISNNVD KYDDSFARDT 850
SIAELTEILH KMDAISDISG EERLDIMSDL TLDGDQGSVH SDVEGWLFKN 900
LTIFFAPCSH LSSVPGEPYV DALSIRQQLA RNITIFTGAT VTDQQKNNRI 950
THVIVDPSAD RDPETGKAKN YTTLRSEFAT RRAIPHFVTV QWVEECWKEK 1000
TLVDEERMYS MPAIALPGLC 1020
Length:1,020
Mass (Da):116,241
Last modified:May 18, 2010 - v1
Checksum:iE34AC539D072D3A8
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ABSU01000001 Genomic DNA. Translation: EFE36857.1.
RefSeqiXP_003017502.1. XM_003017456.1.

Genome annotation databases

GeneIDi9524612.
KEGGiabe:ARB_04383.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
ABSU01000001 Genomic DNA. Translation: EFE36857.1 .
RefSeqi XP_003017502.1. XM_003017456.1.

3D structure databases

ProteinModelPortali D4AJD4.
ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

GeneIDi 9524612.
KEGGi abe:ARB_04383.

Phylogenomic databases

KOi K10777.
OrthoDBi EOG7QC84G.

Family and domain databases

Gene3Di 2.40.50.140. 1 hit.
3.40.50.10190. 2 hits.
InterProi IPR001357. BRCT_dom.
IPR000977. DNA_ligase_ATP-dep.
IPR012309. DNA_ligase_ATP-dep_C.
IPR012310. DNA_ligase_ATP-dep_cent.
IPR016059. DNA_ligase_ATP-dep_CS.
IPR012308. DNA_ligase_ATP-dep_N.
IPR012340. NA-bd_OB-fold.
[Graphical view ]
Pfami PF04679. DNA_ligase_A_C. 1 hit.
PF01068. DNA_ligase_A_M. 1 hit.
PF04675. DNA_ligase_A_N. 1 hit.
[Graphical view ]
SMARTi SM00292. BRCT. 2 hits.
[Graphical view ]
SUPFAMi SSF117018. SSF117018. 1 hit.
SSF50249. SSF50249. 1 hit.
SSF52113. SSF52113. 2 hits.
TIGRFAMsi TIGR00574. dnl1. 1 hit.
PROSITEi PS50172. BRCT. 2 hits.
PS00697. DNA_LIGASE_A1. 1 hit.
PS50160. DNA_LIGASE_A3. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

  1. Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: ATCC MYA-4681 / CBS 112371.

Entry informationi

Entry nameiD4AJD4_ARTBC
AccessioniPrimary (citable) accession number: D4AJD4
Entry historyi
Integrated into UniProtKB/TrEMBL: May 18, 2010
Last sequence update: May 18, 2010
Last modified: November 13, 2013
This is version 24 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome

External Data

Dasty 3

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