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D4AE97

- D4AE97_RAT

UniProt

D4AE97 - D4AE97_RAT

Protein
Submitted name:

Protein Zmiz1

Gene

Zmiz1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 34 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. zinc ion binding Source: InterPro

    GO - Biological processi

    1. artery morphogenesis Source: Ensembl
    2. cell aging Source: Ensembl
    3. developmental growth Source: Ensembl
    4. heart morphogenesis Source: Ensembl
    5. in utero embryonic development Source: Ensembl
    6. positive regulation of fibroblast proliferation Source: Ensembl
    7. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl
    8. vasculogenesis Source: Ensembl
    9. vitellogenesis Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Zmiz1Imported
    Submitted name:
    Retinoic acid induced 17 (Predicted)Imported
    Gene namesi
    Name:Zmiz1Imported
    Synonyms:Rai17_predictedImported
    ORF Names:rCG_39227Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 16

    Organism-specific databases

    RGDi1311620. Zmiz1.

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00550000074410.
    OMAiDFMHGPQ.
    OrthoDBiEOG715Q3Q.
    TreeFamiTF316952.

    Family and domain databases

    Gene3Di3.30.40.10. 1 hit.
    InterProiIPR004181. Znf_MIZ.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view]
    PfamiPF02891. zf-MIZ. 1 hit.
    [Graphical view]
    PROSITEiPS51044. ZF_SP_RING. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4AE97-1 [UniParc]FASTAAdd to Basket

    « Hide

    MNSMDRHIQQ TNDRLQCIKQ HLQNPANFHN AATELLDWCG DPRAFQRPFE     50
    QSLMGCLTVV SRVAAQQGFD LDLGYRLLAV CAANRDKFTP KSAALLSSWC 100
    EELGRLLLLR HQKSRQNDPP GKLPMQPPLN SMSSMKPTLS HSDGSFPYDS 150
    VPWQQNTNQP PGSLSVVTTV WGVTNTSQSQ VLGNPMANAS NPMNPGGNPM 200
    ASGMSTSNPG LNSPQFAGQQ QQFSTKAGPA QPYIQPNMYG RPGYPGSGGF 250
    GASYPGGPSA PAGMGIPPHT RPPADFTQPA AAAAAAAVAA AAATATATAT 300
    ATVAALQETQ NKDINQYGPV CSSFQMGPTQ AYNSQFMNQP GPRGPASMGG 350
    SMNPASMAAG MTPSGMSGPP MGMNQPRPPG ISPFGTHGQR MPQQTYPGPR 400
    PQSLPIQSIK RSYPGEPNYG NQQYGPNSQF PTQPGQYPTP NPPRPLTSPN 450
    YPGQRMPSQP STGQYPPPTV NMGQYYKPEQ FNGQNNTFSS GSSYSSYSQG 500
    SVNRPPRPVP VANYPHSPVP GNPTPPMTPG SSIPPYLSPS QDVKPPFPPD 550
    IKPNMSALPP PPANHNDELR LTFPVRDGVV LEPFRLEHNL AVSNHVFHLR 600
    PTVHQTLMWR SDLELQFKCY HHEDRQMNTN WPASVQVSVN ATPLTIERGD 650
    NKTSHKPLHL KHVCQPGRNT IQITVTACCC SHLFVLQLVH RPSVRSVLQG 700
    LLKKRLLPAE HCITKIKRNF SSVAASSGNT TLNGEDGVEQ TAIKVSLKCP 750
    ITFRRIQLPA RGHDCKHVQC FDLESYLQLN CERGTWRCPV CNKTALLEGL 800
    EVDQYMWGIL NAIQHSEFEE VTIDPTCSWR PVPIKSDLHI KDDPDGIPSK 850
    RFKTMSPSQM IMPNVMEMIA ALGPGPSPYP LPPPPGGTSS NDYSSQGSNY 900
    QGHGNFDFPH GNPGGTSMND FMHGPPQLSH PPDMPNNMAA LEKPLSHPMQ 950
    ETMPHAGSSD QPHPSIQQGL HVPHPSSQAG PPLHHSGAPP PSQPPRQPPQ 1000
    AAPSNHPHSD LTFNPSSALE GQAGAQGASD MPEPSLDLLP ELTNPDELLS 1050
    YLDPPDLPSN SNDDLLSLFE NN 1072
    Length:1,072
    Mass (Da):115,892
    Last modified:April 20, 2010 - v1
    Checksum:i5F5ACD9391F80889
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06086184 Genomic DNA. No translation available.
    AABR06086185 Genomic DNA. No translation available.
    AABR06086186 Genomic DNA. No translation available.
    CH474067 Genomic DNA. Translation: EDL75097.1.
    RefSeqiNP_001101863.1. NM_001108393.1.
    XP_006252599.1. XM_006252537.1.
    UniGeneiRn.1712.

    Genome annotation databases

    EnsembliENSRNOT00000014004; ENSRNOP00000014003; ENSRNOG00000010488.
    GeneIDi361103.
    KEGGirno:361103.
    UCSCiRGD:1311620. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06086184 Genomic DNA. No translation available.
    AABR06086185 Genomic DNA. No translation available.
    AABR06086186 Genomic DNA. No translation available.
    CH474067 Genomic DNA. Translation: EDL75097.1 .
    RefSeqi NP_001101863.1. NM_001108393.1.
    XP_006252599.1. XM_006252537.1.
    UniGenei Rn.1712.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000014004 ; ENSRNOP00000014003 ; ENSRNOG00000010488 .
    GeneIDi 361103.
    KEGGi rno:361103.
    UCSCi RGD:1311620. rat.

    Organism-specific databases

    CTDi 57178.
    RGDi 1311620. Zmiz1.

    Phylogenomic databases

    GeneTreei ENSGT00550000074410.
    OMAi DFMHGPQ.
    OrthoDBi EOG715Q3Q.
    TreeFami TF316952.

    Miscellaneous databases

    NextBioi 675228.
    PROi D4AE97.

    Family and domain databases

    Gene3Di 3.30.40.10. 1 hit.
    InterProi IPR004181. Znf_MIZ.
    IPR013083. Znf_RING/FYVE/PHD.
    [Graphical view ]
    Pfami PF02891. zf-MIZ. 1 hit.
    [Graphical view ]
    PROSITEi PS51044. ZF_SP_RING. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4AE97_RAT
    AccessioniPrimary (citable) accession number: D4AE97
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 34 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3