D4ADZ0 (D4ADZ0_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Polymerase (DNA directed), eta (RAD 30 related) (Predicted) EMBL EDM18802.1

Submitted name:
Protein Polh Ensembl ENSRNOP00000026049

Gene names

Name:	Polh Ensembl ENSRNOP00000026049 RGD 1309893
Synonyms:	Polh_predicted EMBL EDM18802.1
ORF Names:	rCG_43601 EMBL EDM18802.1

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000026049

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	689 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	DNA synthesis involved in DNA repair Inferred from electronic annotation. Source: Compara postreplication repair Inferred from electronic annotation. Source: Compara pyrimidine dimer repair Inferred from electronic annotation. Source: Compara response to UV-C Inferred from electronic annotation. Source: Compara
Cellular_component	cytoplasm Inferred from electronic annotation. Source: Compara nucleus Inferred from electronic annotation. Source: Compara
Molecular_function	DNA-directed DNA polymerase activity Inferred from electronic annotation. Source: Compara damaged DNA binding Inferred from electronic annotation. Source: InterPro
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D4ADZ0 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 02F8C0809D93FB53	FASTA	689	75,746
	10 20 30 40 50 60 MAPGQDLVVA LVDMDCFFVQ VEQRQNPHLR NKPCAVVQYK SWKGGGIIAV SYEARAFGVT 70 80 90 100 110 120 RNMWADDAKK LCPDLLLAQV RESRGKANLT KYREASVEVM EIMSHFAVIE RASIDEAYID 130 140 150 160 170 180 LTNAVQERLE KLQGQPVSAD LLPSTYIEGL PRGPAVEDTV EKEDIRKQGL LQWLGSLEKD 190 200 210 220 230 240 DPTSPDLRLT VGAVIVEEMR AAIERKTGFQ CSAGISHNKV LAKLACGLNK PNRQTLVSHG 250 260 270 280 290 300 SVPQLFSQMP IRKIRSLGGK LGASVIDVLG VEYMGDLTQF TEAQLQSHFG EKNGSWLYAM 310 320 330 340 350 360 CRGIEHEPVK PRQLPKTIGC SKNFPGKTAL ATREQVQWWL LQLALELEER LTKDRTDNGR 370 380 390 400 410 420 VATQLVVSIR VEGDKRLSSL RRCCALTRYD AHKMSQDAFA TIRNCNTSGV QTEWSPPLTM 430 440 450 460 470 480 LFLCATKFSA SAPPACTDIT VFLSSDSGCQ PKVPAASSGT RTQEPGPAAP TSKEAATSLE 490 500 510 520 530 540 SFFQKAAKRQ RMRETSFVPP KVAVEKSSSK PSLLFQTSGS PGTKSFFKQK SLLLQHTELS 550 560 570 580 590 600 NAAAPCPPQA SSAVQPSRLP TDRADSRASC EEVCKPVSSK AVSTEVNVAG NSSLAYNSQE 610 620 630 640 650 660 MTQRAAEDQV LCEKCDSLVP VWDMPEHLDY HFALELQKSF LQPCTSKPQA VPVSPQGKRN 670 680 PKSPLASSNK RLRPHGMQTL ESFFKPLTH

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000026049.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM18802.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM18802.1.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000026049.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06058815 Genomic DNA. No translation available. CH473987 Genomic DNA. Translation: EDM18802.1.
IPI	IPI00194322.
RefSeq	NP_001101674.1. NM_001108204.1.
UniGene	Rn.53711.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000026049; ENSRNOP00000026049; ENSRNOG00000019195.
GeneID	316235.
KEGG	rno:316235.
UCSC	RGD:1309893. rat.
Organism-specific databases
CTD	5429.
RGD	1309893. Polh.
Phylogenomic databases
GeneTree	ENSGT00530000062942.
KO	K03509.
OMA	SPPLTML.
OrthoDB	EOG4RBQJ8.
Family and domain databases
Gene3D	3.30.1490.100. 1 hit.
InterPro	IPR017061. DNA_pol_eta. IPR017961. DNA_pol_Y-fam_little_finger. IPR001126. DNA_repair_prot_UmuC-like. IPR017963. DNA_repair_prot_UmuC-like_N. [Graphical view]
Pfam	PF00817. IMS. 1 hit. PF11799. IMS_C. 1 hit. [Graphical view]
PIRSF	PIRSF036603. DPol_eta. 1 hit.
SUPFAM	SSF100879. DNA_pol_Y-fam_little_finger. 1 hit.
PROSITE	PS50173. UMUC. 1 hit. [Graphical view]
ProtoNet	Search...
Other
NextBio	670614.

Entry information

Entry name

D4ADZ0_RAT

Accession

Primary (citable) accession number: D4ADZ0

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	April 3, 2013
This is version 27 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)