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D4ADZ0

- D4ADZ0_RAT

UniProt

D4ADZ0 - D4ADZ0_RAT

Protein
Submitted name:

Polymerase (DNA directed), eta (RAD 30 related) (Predicted)

Gene

Polh

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 2 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. damaged DNA binding Source: InterPro
    2. DNA-directed DNA polymerase activity Source: Ensembl

    GO - Biological processi

    1. DNA synthesis involved in DNA repair Source: Ensembl
    2. postreplication repair Source: Ensembl
    3. pyrimidine dimer repair Source: Ensembl
    4. response to UV-C Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Polymerase (DNA directed), eta (RAD 30 related) (Predicted)Imported
    Submitted name:
    Protein PolhImported
    Gene namesi
    Name:PolhImported
    Synonyms:Polh_predictedImported
    ORF Names:rCG_43601Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 9

    Organism-specific databases

    RGDi1309893. Polh.

    Subcellular locationi

    GO - Cellular componenti

    1. cytoplasm Source: Ensembl
    2. nucleus Source: Ensembl

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00530000062942.
    KOiK03509.
    OMAiSPPLTML.
    OrthoDBiEOG7N63M8.
    TreeFamiTF103010.

    Family and domain databases

    Gene3Di3.30.1490.100. 1 hit.
    InterProiIPR017061. DNA_pol_eta.
    IPR017961. DNA_pol_Y-fam_little_finger.
    IPR001126. DNA_repair_prot_UmuC-like.
    IPR017963. DNA_repair_prot_UmuC-like_N.
    [Graphical view]
    PfamiPF00817. IMS. 1 hit.
    PF11799. IMS_C. 1 hit.
    [Graphical view]
    PIRSFiPIRSF036603. DPol_eta. 1 hit.
    SUPFAMiSSF100879. SSF100879. 1 hit.
    PROSITEiPS50173. UMUC. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4ADZ0-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAPGQDLVVA LVDMDCFFVQ VEQRQNPHLR NKPCAVVQYK SWKGGGIIAV    50
    SYEARAFGVT RNMWADDAKK LCPDLLLAQV RESRGKANLT KYREASVEVM 100
    EIMSHFAVIE RASIDEAYID LTNAVQERLE KLQGQPVSAD LLPSTYIEGL 150
    PRGPAVEDTV EKEDIRKQGL LQWLGSLEKD DPTSPDLRLT VGAVIVEEMR 200
    AAIERKTGFQ CSAGISHNKV LAKLACGLNK PNRQTLVSHG SVPQLFSQMP 250
    IRKIRSLGGK LGASVIDVLG VEYMGDLTQF TEAQLQSHFG EKNGSWLYAM 300
    CRGIEHEPVK PRQLPKTIGC SKNFPGKTAL ATREQVQWWL LQLALELEER 350
    LTKDRTDNGR VATQLVVSIR VEGDKRLSSL RRCCALTRYD AHKMSQDAFA 400
    TIRNCNTSGV QTEWSPPLTM LFLCATKFSA SAPPACTDIT VFLSSDSGCQ 450
    PKVPAASSGT RTQEPGPAAP TSKEAATSLE SFFQKAAKRQ RMRETSFVPP 500
    KVAVEKSSSK PSLLFQTSGS PGTKSFFKQK SLLLQHTELS NAAAPCPPQA 550
    SSAVQPSRLP TDRADSRASC EEVCKPVSSK AVSTEVNVAG NSSLAYNSQE 600
    MTQRAAEDQV LCEKCDSLVP VWDMPEHLDY HFALELQKSF LQPCTSKPQA 650
    VPVSPQGKRN PKSPLASSNK RLRPHGMQTL ESFFKPLTH 689
    Length:689
    Mass (Da):75,746
    Last modified:April 20, 2010 - v1
    Checksum:i02F8C0809D93FB53
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06058815 Genomic DNA. No translation available.
    CH473987 Genomic DNA. Translation: EDM18802.1.
    RefSeqiNP_001101674.1. NM_001108204.1.
    UniGeneiRn.121170.
    Rn.53711.

    Genome annotation databases

    EnsembliENSRNOT00000026049; ENSRNOP00000026049; ENSRNOG00000019195.
    GeneIDi316235.
    KEGGirno:316235.
    UCSCiRGD:1309893. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06058815 Genomic DNA. No translation available.
    CH473987 Genomic DNA. Translation: EDM18802.1 .
    RefSeqi NP_001101674.1. NM_001108204.1.
    UniGenei Rn.121170.
    Rn.53711.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000026049 ; ENSRNOP00000026049 ; ENSRNOG00000019195 .
    GeneIDi 316235.
    KEGGi rno:316235.
    UCSCi RGD:1309893. rat.

    Organism-specific databases

    CTDi 5429.
    RGDi 1309893. Polh.

    Phylogenomic databases

    GeneTreei ENSGT00530000062942.
    KOi K03509.
    OMAi SPPLTML.
    OrthoDBi EOG7N63M8.
    TreeFami TF103010.

    Miscellaneous databases

    NextBioi 670614.
    PROi D4ADZ0.

    Family and domain databases

    Gene3Di 3.30.1490.100. 1 hit.
    InterProi IPR017061. DNA_pol_eta.
    IPR017961. DNA_pol_Y-fam_little_finger.
    IPR001126. DNA_repair_prot_UmuC-like.
    IPR017963. DNA_repair_prot_UmuC-like_N.
    [Graphical view ]
    Pfami PF00817. IMS. 1 hit.
    PF11799. IMS_C. 1 hit.
    [Graphical view ]
    PIRSFi PIRSF036603. DPol_eta. 1 hit.
    SUPFAMi SSF100879. SSF100879. 1 hit.
    PROSITEi PS50173. UMUC. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4ADZ0_RAT
    AccessioniPrimary (citable) accession number: D4ADZ0
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3