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D4ADZ0 (D4ADZ0_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 34. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein names

Protein Polh Ensembl ENSRNOP00000026049
Gene names
Name:Polh Ensembl ENSRNOP00000026049 RGD 1309893
Synonyms:Polh_predicted EMBL EDM18802.1
ORF Names:rCG_43601 EMBL EDM18802.1
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000026049
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus

Protein attributes

Sequence length689 AA.
Sequence statusComplete.
Protein existencePredicted

Sequences

Sequence LengthMass (Da)Tools
D4ADZ0 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 02F8C0809D93FB53

FASTA68975,746
        10         20         30         40         50         60 
MAPGQDLVVA LVDMDCFFVQ VEQRQNPHLR NKPCAVVQYK SWKGGGIIAV SYEARAFGVT 

        70         80         90        100        110        120 
RNMWADDAKK LCPDLLLAQV RESRGKANLT KYREASVEVM EIMSHFAVIE RASIDEAYID 

       130        140        150        160        170        180 
LTNAVQERLE KLQGQPVSAD LLPSTYIEGL PRGPAVEDTV EKEDIRKQGL LQWLGSLEKD 

       190        200        210        220        230        240 
DPTSPDLRLT VGAVIVEEMR AAIERKTGFQ CSAGISHNKV LAKLACGLNK PNRQTLVSHG 

       250        260        270        280        290        300 
SVPQLFSQMP IRKIRSLGGK LGASVIDVLG VEYMGDLTQF TEAQLQSHFG EKNGSWLYAM 

       310        320        330        340        350        360 
CRGIEHEPVK PRQLPKTIGC SKNFPGKTAL ATREQVQWWL LQLALELEER LTKDRTDNGR 

       370        380        390        400        410        420 
VATQLVVSIR VEGDKRLSSL RRCCALTRYD AHKMSQDAFA TIRNCNTSGV QTEWSPPLTM 

       430        440        450        460        470        480 
LFLCATKFSA SAPPACTDIT VFLSSDSGCQ PKVPAASSGT RTQEPGPAAP TSKEAATSLE 

       490        500        510        520        530        540 
SFFQKAAKRQ RMRETSFVPP KVAVEKSSSK PSLLFQTSGS PGTKSFFKQK SLLLQHTELS 

       550        560        570        580        590        600 
NAAAPCPPQA SSAVQPSRLP TDRADSRASC EEVCKPVSSK AVSTEVNVAG NSSLAYNSQE 

       610        620        630        640        650        660 
MTQRAAEDQV LCEKCDSLVP VWDMPEHLDY HFALELQKSF LQPCTSKPQA VPVSPQGKRN 

       670        680 
PKSPLASSNK RLRPHGMQTL ESFFKPLTH 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000026049.
[2]"Gene and alternative splicing annotation with AIR."
Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G.
Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM18802.1.
[3]Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. expand/collapse author list , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F.
Submitted (SEP-2005) to the EMBL/GenBank/DDBJ databases
Cited for: NUCLEOTIDE SEQUENCE.
Strain: BN EMBL EDM18802.1.
[4]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000026049.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06058815 Genomic DNA. No translation available.
CH473987 Genomic DNA. Translation: EDM18802.1.
RefSeqNP_001101674.1. NM_001108204.1.
UniGeneRn.121170.
Rn.53711.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000026049; ENSRNOP00000026049; ENSRNOG00000019195.
GeneID316235.
KEGGrno:316235.
UCSCRGD:1309893. rat.

Organism-specific databases

CTD5429.
RGD1309893. Polh.

Phylogenomic databases

GeneTreeENSGT00530000062942.
KOK03509.
OMASPPLTML.
OrthoDBEOG7N63M8.
PhylomeDBD4ADZ0.
TreeFamTF103010.

Family and domain databases

Gene3D3.30.1490.100. 1 hit.
InterProIPR017061. DNA_pol_eta.
IPR017961. DNA_pol_Y-fam_little_finger.
IPR001126. DNA_repair_prot_UmuC-like.
IPR017963. DNA_repair_prot_UmuC-like_N.
[Graphical view]
PfamPF00817. IMS. 1 hit.
PF11799. IMS_C. 1 hit.
[Graphical view]
PIRSFPIRSF036603. DPol_eta. 1 hit.
SUPFAMSSF100879. SSF100879. 1 hit.
PROSITEPS50173. UMUC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio670614.
PROD4ADZ0.

Entry information

Entry nameD4ADZ0_RAT
AccessionPrimary (citable) accession number: D4ADZ0
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 34 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)