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D4ADZ0

- D4ADZ0_RAT

UniProt

D4ADZ0 - D4ADZ0_RAT

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Protein
Submitted name:

Polymerase (DNA directed), eta (RAD 30 related) (Predicted)

Gene

Polh

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. damaged DNA binding Source: InterPro
  2. DNA-directed DNA polymerase activity Source: Ensembl

GO - Biological processi

  1. DNA synthesis involved in DNA repair Source: Ensembl
  2. postreplication repair Source: Ensembl
  3. pyrimidine dimer repair Source: Ensembl
  4. response to UV-C Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Polymerase (DNA directed), eta (RAD 30 related) (Predicted)Imported
Submitted name:
Protein PolhImported
Gene namesi
Name:PolhImported
Synonyms:Polh_predictedImported
ORF Names:rCG_43601Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 9

Organism-specific databases

RGDi1309893. Polh.

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00530000062942.
KOiK03509.
OMAiSPPLTML.
OrthoDBiEOG7N63M8.
TreeFamiTF103010.

Family and domain databases

Gene3Di3.30.1490.100. 1 hit.
InterProiIPR017061. DNA_pol_eta.
IPR017961. DNA_pol_Y-fam_little_finger.
IPR001126. DNA_repair_prot_UmuC-like.
IPR017963. DNA_repair_prot_UmuC-like_N.
[Graphical view]
PfamiPF00817. IMS. 1 hit.
PF11799. IMS_C. 1 hit.
[Graphical view]
PIRSFiPIRSF036603. DPol_eta. 1 hit.
SUPFAMiSSF100879. SSF100879. 1 hit.
PROSITEiPS50173. UMUC. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4ADZ0-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MAPGQDLVVA LVDMDCFFVQ VEQRQNPHLR NKPCAVVQYK SWKGGGIIAV
60 70 80 90 100
SYEARAFGVT RNMWADDAKK LCPDLLLAQV RESRGKANLT KYREASVEVM
110 120 130 140 150
EIMSHFAVIE RASIDEAYID LTNAVQERLE KLQGQPVSAD LLPSTYIEGL
160 170 180 190 200
PRGPAVEDTV EKEDIRKQGL LQWLGSLEKD DPTSPDLRLT VGAVIVEEMR
210 220 230 240 250
AAIERKTGFQ CSAGISHNKV LAKLACGLNK PNRQTLVSHG SVPQLFSQMP
260 270 280 290 300
IRKIRSLGGK LGASVIDVLG VEYMGDLTQF TEAQLQSHFG EKNGSWLYAM
310 320 330 340 350
CRGIEHEPVK PRQLPKTIGC SKNFPGKTAL ATREQVQWWL LQLALELEER
360 370 380 390 400
LTKDRTDNGR VATQLVVSIR VEGDKRLSSL RRCCALTRYD AHKMSQDAFA
410 420 430 440 450
TIRNCNTSGV QTEWSPPLTM LFLCATKFSA SAPPACTDIT VFLSSDSGCQ
460 470 480 490 500
PKVPAASSGT RTQEPGPAAP TSKEAATSLE SFFQKAAKRQ RMRETSFVPP
510 520 530 540 550
KVAVEKSSSK PSLLFQTSGS PGTKSFFKQK SLLLQHTELS NAAAPCPPQA
560 570 580 590 600
SSAVQPSRLP TDRADSRASC EEVCKPVSSK AVSTEVNVAG NSSLAYNSQE
610 620 630 640 650
MTQRAAEDQV LCEKCDSLVP VWDMPEHLDY HFALELQKSF LQPCTSKPQA
660 670 680
VPVSPQGKRN PKSPLASSNK RLRPHGMQTL ESFFKPLTH
Length:689
Mass (Da):75,746
Last modified:April 20, 2010 - v1
Checksum:i02F8C0809D93FB53
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06058815 Genomic DNA. No translation available.
CH473987 Genomic DNA. Translation: EDM18802.1.
RefSeqiNP_001101674.1. NM_001108204.1.
UniGeneiRn.121170.
Rn.53711.

Genome annotation databases

EnsembliENSRNOT00000026049; ENSRNOP00000026049; ENSRNOG00000019195.
GeneIDi316235.
KEGGirno:316235.
UCSCiRGD:1309893. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06058815 Genomic DNA. No translation available.
CH473987 Genomic DNA. Translation: EDM18802.1 .
RefSeqi NP_001101674.1. NM_001108204.1.
UniGenei Rn.121170.
Rn.53711.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000026049 ; ENSRNOP00000026049 ; ENSRNOG00000019195 .
GeneIDi 316235.
KEGGi rno:316235.
UCSCi RGD:1309893. rat.

Organism-specific databases

CTDi 5429.
RGDi 1309893. Polh.

Phylogenomic databases

GeneTreei ENSGT00530000062942.
KOi K03509.
OMAi SPPLTML.
OrthoDBi EOG7N63M8.
TreeFami TF103010.

Miscellaneous databases

NextBioi 670614.
PROi D4ADZ0.

Family and domain databases

Gene3Di 3.30.1490.100. 1 hit.
InterProi IPR017061. DNA_pol_eta.
IPR017961. DNA_pol_Y-fam_little_finger.
IPR001126. DNA_repair_prot_UmuC-like.
IPR017963. DNA_repair_prot_UmuC-like_N.
[Graphical view ]
Pfami PF00817. IMS. 1 hit.
PF11799. IMS_C. 1 hit.
[Graphical view ]
PIRSFi PIRSF036603. DPol_eta. 1 hit.
SUPFAMi SSF100879. SSF100879. 1 hit.
PROSITEi PS50173. UMUC. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4ADZ0_RAT
AccessioniPrimary (citable) accession number: D4ADZ0
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 29, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3