D4ACI9 (D4ACI9_RAT) Unreviewed, UniProtKB/TrEMBL

Names and origin

Protein names

Submitted name:
Intraflagellar transport 88 homolog (Chlamydomonas) (Predicted) EMBL EDM14349.1

Submitted name:
Protein Ift88 Ensembl ENSRNOP00000012988

Gene names

Name:	Ift88 Ensembl ENSRNOP00000012988 RGD 1309717
Synonyms:	Ift88_predicted EMBL EDM14349.1
ORF Names:	rCG_23607 EMBL EDM14349.1

Organism

Rattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000012988

Taxonomic identifier

10116 [NCBI]

Taxonomic lineage

cellular organisms › Eukaryota › Opisthokonta › Metazoa › Eumetazoa › Bilateria › Deuterostomia › Chordata › Craniata › Vertebrata › Gnathostomata › Teleostomi › Euteleostomi › Sarcopterygii › Tetrapoda › Amniota › Mammalia › Theria › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length	815 AA.
Sequence status	Complete.
Protein existence	Predicted

Ontologies

Keywords
Cellular component	Cell projection Cilium Flagellum EMBL EDM14349.1
Domain	Repeat SAAS SAAS001440 RuleBase RU003537 TPR repeat SAAS SAAS001440 RuleBase RU003339
Technical term	Complete proteome Reference proteome
Gene Ontology (GO)
Biological_process	anterior/posterior pattern specification Inferred from electronic annotation. Source: Compara cardiac septum morphogenesis Inferred from electronic annotation. Source: Compara cilium morphogenesis Inferred from electronic annotation. Source: Compara determination of left/right symmetry Inferred from electronic annotation. Source: Compara dorsal/ventral pattern formation Inferred from electronic annotation. Source: Compara embryonic digit morphogenesis Inferred from electronic annotation. Source: Compara embryonic organ development Inferred from electronic annotation. Source: Compara epithelial cell morphogenesis Inferred from electronic annotation. Source: Compara forebrain morphogenesis Inferred from electronic annotation. Source: Compara in utero embryonic development Inferred from electronic annotation. Source: Compara lung vasculature development Inferred from electronic annotation. Source: Compara positive regulation of proteolysis Inferred from electronic annotation. Source: Compara protein processing Inferred from electronic annotation. Source: Compara regulation of odontogenesis of dentin-containing tooth Inferred from electronic annotation. Source: Compara smoothened signaling pathway Inferred from electronic annotation. Source: Compara telencephalon development Inferred from electronic annotation. Source: Compara
Cellular_component	apical part of cell Inferred from electronic annotation. Source: Compara centriole Inferred from electronic annotation. Source: Compara cilium axoneme Inferred from electronic annotation. Source: Compara microtubule basal body Inferred from electronic annotation. Source: Compara motile primary cilium Inferred from electronic annotation. Source: Compara photoreceptor connecting cilium Inferred from electronic annotation. Source: Compara
Complete GO annotation...

Sequences

	Sequence		Length	Mass (Da)
	D4ACI9 [UniParc]. Last modified April 20, 2010. Version 1. Checksum: 938EE721F5179A01	FASTA	815	91,885
	10 20 30 40 50 60 MMENVHLAPE TDEDDLYSGF NDYNPAYDTE ELENDTGFQQ AVRTSHGRRP PVTAKIPSTA 70 80 90 100 110 120 VSRPIATGYG SKTSLTSSMG RPMTGTIQDG VARPMTAVRA AGFSKAALRG SAFDPLGQSR 130 140 150 160 170 180 GPAPPLEAKN EDSPEEKIRQ LEKKVNELVE ESCIANSCGD LKLALEKAKD AGRKERVLVR 190 200 210 220 230 240 QREQVTSPEN INLDLTYSVL FNLASQYSAN EMYAEALNTY QVIVKNKMFS NAGRLKVNMG 250 260 270 280 290 300 NIYLKQRNYS KAIKFYRMAL DQIPSVHKEM RIKIMQNIGI TFIKTGQYSD AINSFEHIMS 310 320 330 340 350 360 MAPSLKAGFN LILSCFAIGD REKMKKAFQK LIAVPLEIDE DDKYISPSDD PHTNLLIEAI 370 380 390 400 410 420 KNDHLRQMER ERKAMAEKYI MTAAKLIAPV IEASFAVGYN WCVEVVKASQ YVELANDLEI 430 440 450 460 470 480 NKAITYLRQK DFNQAVDTLK MFEKKDSRVK SAAATNLSFL YYLENEFAQA SSYADLAVSS 490 500 510 520 530 540 DRYNPSALTN KGNTVFANGD YEKAAEFYKE ALRNDSSCTE ALYNIGLTYK KLNRLDEALD 550 560 570 580 590 600 SFLKLHAILR NSAQVLCQIA NVYELMEDPN QAIEWLMQLI SVVPTDSQAL SKLGELYDSE 610 620 630 640 650 660 GDKSQAFQYY YESYRYFPSN IEVIEWLGAY YIDTQFCEKA IQYFERASLI QPTQVKWQLM 670 680 690 700 710 720 VASCFRRSGN YQKALDTYKE IHRKFPENVE CLRFLVRLCT DIGLKEVQEY ATKLKRLEKM 730 740 750 760 770 780 KEMREQRIKS GRDSGGGSRS KREGSAGSDS GQNSSASSKS ERLSAKLRAL PGTDEPYESS 790 800 810 GNKEIGKCLL CGSTGPSDRK TKNCSQKENR RGRFC

References

	« Hide 'large scale' referencesShow 'large scale' references »
[1]	"Genome sequence of the Brown Norway rat yields insights into mammalian evolution." Rat Genome Sequencing Project Consortium Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S. Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA]. Strain: Brown Norway Ensembl ENSRNOP00000012988.
[2]	"Gene and alternative splicing annotation with AIR." Florea L., Di Francesco V., Miller J., Turner R., Yao A., Harris M., Walenz B., Mobarry C., Merkulov G.V., Charlab R., Dew I., Deng Z., Istrail S., Li P., Sutton G. Genome Res. 15:54-66(2005) [PubMed] [Europe PMC] [Abstract] Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM14349.1.
[3]	Mural R.J., Li P.W., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S.H., Dew I., Evans C.A., Ferriera S., Flanigan M., Fosler C., Glodek A., Gu Z., Holt R.A., Jennings D., Kraft C.L., Lu F. , Nguyen T., Nusskern D.R., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Wang Z., Woodage T., Zheng X.H., Zhong F. Submitted (JUL-2005) to the EMBL/GenBank/DDBJ databases Cited for: NUCLEOTIDE SEQUENCE. Strain: BN EMBL EDM14349.1.
[4]	Ensembl Submitted (JUL-2011) to UniProtKB Cited for: IDENTIFICATION. Strain: Brown Norway Ensembl ENSRNOP00000012988.

Cross-references

Sequence databases
EMBL GenBank DDBJ	AABR06083433 Genomic DNA. No translation available. AABR06083434 Genomic DNA. No translation available. CH474049 Genomic DNA. Translation: EDM14349.1.
IPI	IPI00372651.
RefSeq	NP_001100736.1. NM_001107266.1.
UniGene	Rn.132110.
3D structure databases
ModBase	Search...
Protocols and materials databases
StructuralBiologyKnowledgebase	Search...
Genome annotation databases
Ensembl	ENSRNOT00000012988; ENSRNOP00000012988; ENSRNOG00000009278.
GeneID	305918.
KEGG	rno:305918.
UCSC	RGD:1309717. rat.
Organism-specific databases
CTD	8100.
RGD	1309717. Ift88.
Phylogenomic databases
GeneTree	ENSGT00390000015473.
KO	K16474.
OrthoDB	EOG45DWNT.
Family and domain databases
Gene3D	1.25.40.10. 4 hits.
InterPro	IPR001440. TPR-1. IPR013026. TPR-contain_dom. IPR011990. TPR-like_helical. IPR019734. TPR_repeat. [Graphical view]
Pfam	PF00515. TPR_1. 1 hit. PF13174. TPR_6. 1 hit. [Graphical view]
SMART	SM00028. TPR. 7 hits. [Graphical view]
PROSITE	PS50005. TPR. 10 hits. PS50293. TPR_REGION. 2 hits. [Graphical view]
ProtoNet	Search...
Other
NextBio	655246.

Entry information

Entry name

D4ACI9_RAT

Accession

Primary (citable) accession number: D4ACI9

Entry history

Integrated into UniProtKB/TrEMBL:	April 20, 2010
Last sequence update:	April 20, 2010
Last modified:	April 3, 2013
This is version 29 of the entry and version 1 of the sequence. [Complete history]

Entry status

Unreviewed (UniProtKB/TrEMBL)