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D4ACI9

- D4ACI9_RAT

UniProt

D4ACI9 - D4ACI9_RAT

Protein
Submitted name:

Intraflagellar transport 88 homolog (Chlamydomonas) (Predicted)

Gene

Ift88

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 4 out of 5- Protein predictedi
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    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Biological processi

    1. anterior/posterior pattern specification Source: Ensembl
    2. cardiac septum morphogenesis Source: Ensembl
    3. cilium morphogenesis Source: Ensembl
    4. determination of left/right symmetry Source: Ensembl
    5. embryonic digit morphogenesis Source: Ensembl
    6. embryonic organ development Source: Ensembl
    7. epithelial cell morphogenesis Source: Ensembl
    8. eye development Source: Ensembl
    9. forebrain morphogenesis Source: Ensembl
    10. in utero embryonic development Source: Ensembl
    11. lung vasculature development Source: Ensembl
    12. palate development Source: Ensembl
    13. positive regulation of proteolysis Source: Ensembl
    14. protein localization Source: Ensembl
    15. protein processing Source: Ensembl
    16. regulation of odontogenesis of dentin-containing tooth Source: Ensembl
    17. smoothened signaling pathway Source: Ensembl
    18. spinal cord dorsal/ventral patterning Source: Ensembl
    19. telencephalon development Source: Ensembl

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Intraflagellar transport 88 homolog (Chlamydomonas) (Predicted)Imported
    Submitted name:
    Protein Ift88Imported
    Gene namesi
    Name:Ift88Imported
    Synonyms:Ift88_predictedImported
    ORF Names:rCG_23607Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 15

    Organism-specific databases

    RGDi1309717. Ift88.

    Subcellular locationi

    GO - Cellular componenti

    1. apical part of cell Source: Ensembl
    2. axoneme Source: Ensembl
    3. centriole Source: Ensembl
    4. motile primary cilium Source: Ensembl
    5. outer acrosomal membrane Source: MGI
    6. photoreceptor connecting cilium Source: Ensembl
    7. trans-Golgi network Source: MGI

    Keywords - Cellular componenti

    Cell projection, Cilium, FlagellumImported

    Family & Domainsi

    Keywords - Domaini

    RepeatUniRule annotation, TPR repeatUniRule annotationSAAS annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000015473.
    KOiK16474.
    OMAiLILCYYA.
    OrthoDBiEOG7N37D5.
    TreeFamiTF313218.

    Family and domain databases

    Gene3Di1.25.40.10. 4 hits.
    InterProiIPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    IPR019734. TPR_repeat.
    [Graphical view]
    PfamiPF00515. TPR_1. 1 hit.
    PF13174. TPR_6. 1 hit.
    [Graphical view]
    SMARTiSM00028. TPR. 7 hits.
    [Graphical view]
    PROSITEiPS50005. TPR. 10 hits.
    PS50293. TPR_REGION. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4ACI9-1 [UniParc]FASTAAdd to Basket

    « Hide

    MMENVHLAPE TDEDDLYSGF NDYNPAYDTE ELENDTGFQQ AVRTSHGRRP    50
    PVTAKIPSTA VSRPIATGYG SKTSLTSSMG RPMTGTIQDG VARPMTAVRA 100
    AGFSKAALRG SAFDPLGQSR GPAPPLEAKN EDSPEEKIRQ LEKKVNELVE 150
    ESCIANSCGD LKLALEKAKD AGRKERVLVR QREQVTSPEN INLDLTYSVL 200
    FNLASQYSAN EMYAEALNTY QVIVKNKMFS NAGRLKVNMG NIYLKQRNYS 250
    KAIKFYRMAL DQIPSVHKEM RIKIMQNIGI TFIKTGQYSD AINSFEHIMS 300
    MAPSLKAGFN LILSCFAIGD REKMKKAFQK LIAVPLEIDE DDKYISPSDD 350
    PHTNLLIEAI KNDHLRQMER ERKAMAEKYI MTAAKLIAPV IEASFAVGYN 400
    WCVEVVKASQ YVELANDLEI NKAITYLRQK DFNQAVDTLK MFEKKDSRVK 450
    SAAATNLSFL YYLENEFAQA SSYADLAVSS DRYNPSALTN KGNTVFANGD 500
    YEKAAEFYKE ALRNDSSCTE ALYNIGLTYK KLNRLDEALD SFLKLHAILR 550
    NSAQVLCQIA NVYELMEDPN QAIEWLMQLI SVVPTDSQAL SKLGELYDSE 600
    GDKSQAFQYY YESYRYFPSN IEVIEWLGAY YIDTQFCEKA IQYFERASLI 650
    QPTQVKWQLM VASCFRRSGN YQKALDTYKE IHRKFPENVE CLRFLVRLCT 700
    DIGLKEVQEY ATKLKRLEKM KEMREQRIKS GRDSGGGSRS KREGSAGSDS 750
    GQNSSASSKS ERLSAKLRAL PGTDEPYESS GNKEIGKCLL CGSTGPSDRK 800
    TKNCSQKENR RGRFC 815
    Length:815
    Mass (Da):91,885
    Last modified:April 20, 2010 - v1
    Checksum:i938EE721F5179A01
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06083433 Genomic DNA. No translation available.
    AABR06083434 Genomic DNA. No translation available.
    CH474049 Genomic DNA. Translation: EDM14349.1.
    RefSeqiNP_001100736.1. NM_001107266.1.
    UniGeneiRn.132110.

    Genome annotation databases

    EnsembliENSRNOT00000012988; ENSRNOP00000012988; ENSRNOG00000009278.
    GeneIDi305918.
    KEGGirno:305918.
    UCSCiRGD:1309717. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06083433 Genomic DNA. No translation available.
    AABR06083434 Genomic DNA. No translation available.
    CH474049 Genomic DNA. Translation: EDM14349.1 .
    RefSeqi NP_001100736.1. NM_001107266.1.
    UniGenei Rn.132110.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000012988 ; ENSRNOP00000012988 ; ENSRNOG00000009278 .
    GeneIDi 305918.
    KEGGi rno:305918.
    UCSCi RGD:1309717. rat.

    Organism-specific databases

    CTDi 8100.
    RGDi 1309717. Ift88.

    Phylogenomic databases

    GeneTreei ENSGT00390000015473.
    KOi K16474.
    OMAi LILCYYA.
    OrthoDBi EOG7N37D5.
    TreeFami TF313218.

    Miscellaneous databases

    NextBioi 655246.

    Family and domain databases

    Gene3Di 1.25.40.10. 4 hits.
    InterProi IPR013026. TPR-contain_dom.
    IPR011990. TPR-like_helical.
    IPR001440. TPR_1.
    IPR019734. TPR_repeat.
    [Graphical view ]
    Pfami PF00515. TPR_1. 1 hit.
    PF13174. TPR_6. 1 hit.
    [Graphical view ]
    SMARTi SM00028. TPR. 7 hits.
    [Graphical view ]
    PROSITEi PS50005. TPR. 10 hits.
    PS50293. TPR_REGION. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4ACI9_RAT
    AccessioniPrimary (citable) accession number: D4ACI9
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3