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D4ACI9

- D4ACI9_RAT

UniProt

D4ACI9 - D4ACI9_RAT

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Protein
Submitted name:

Intraflagellar transport 88 homolog (Chlamydomonas) (Predicted)

Gene
Ift88, Ift88_predicted, rCG_23607
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 4 out of 5 - Protein predictedi

Functioni

GO - Biological processi

  1. anterior/posterior pattern specification Source: Ensembl
  2. cardiac septum morphogenesis Source: Ensembl
  3. cilium morphogenesis Source: Ensembl
  4. determination of left/right symmetry Source: Ensembl
  5. embryonic digit morphogenesis Source: Ensembl
  6. embryonic organ development Source: Ensembl
  7. epithelial cell morphogenesis Source: Ensembl
  8. eye development Source: Ensembl
  9. forebrain morphogenesis Source: Ensembl
  10. in utero embryonic development Source: Ensembl
  11. lung vasculature development Source: Ensembl
  12. palate development Source: Ensembl
  13. positive regulation of proteolysis Source: Ensembl
  14. protein localization Source: Ensembl
  15. protein processing Source: Ensembl
  16. regulation of odontogenesis of dentin-containing tooth Source: Ensembl
  17. smoothened signaling pathway Source: Ensembl
  18. spinal cord dorsal/ventral patterning Source: Ensembl
  19. telencephalon development Source: Ensembl
Complete GO annotation...

Names & Taxonomyi

Protein namesi
Submitted name:
Intraflagellar transport 88 homolog (Chlamydomonas) (Predicted)Imported
Submitted name:
Protein Ift88Imported
Gene namesi
Name:Ift88Imported
Synonyms:Ift88_predictedImported
ORF Names:rCG_23607Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 15

Organism-specific databases

RGDi1309717. Ift88.

Subcellular locationi

GO - Cellular componenti

  1. apical part of cell Source: Ensembl
  2. axoneme Source: Ensembl
  3. centriole Source: Ensembl
  4. motile primary cilium Source: Ensembl
  5. outer acrosomal membrane Source: MGI
  6. photoreceptor connecting cilium Source: Ensembl
  7. trans-Golgi network Source: MGI
Complete GO annotation...

Keywords - Cellular componenti

Cell projection, Cilium, FlagellumImported

Family & Domainsi

Keywords - Domaini

RepeatUniRule annotation, TPR repeatUniRule annotationSAAS annotations

Phylogenomic databases

GeneTreeiENSGT00390000015473.
KOiK16474.
OMAiLILCYYA.
OrthoDBiEOG7N37D5.
TreeFamiTF313218.

Family and domain databases

Gene3Di1.25.40.10. 4 hits.
InterProiIPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR019734. TPR_repeat.
[Graphical view]
PfamiPF00515. TPR_1. 1 hit.
PF13174. TPR_6. 1 hit.
[Graphical view]
SMARTiSM00028. TPR. 7 hits.
[Graphical view]
PROSITEiPS50005. TPR. 10 hits.
PS50293. TPR_REGION. 2 hits.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4ACI9-1 [UniParc]FASTAAdd to Basket

« Hide

MMENVHLAPE TDEDDLYSGF NDYNPAYDTE ELENDTGFQQ AVRTSHGRRP    50
PVTAKIPSTA VSRPIATGYG SKTSLTSSMG RPMTGTIQDG VARPMTAVRA 100
AGFSKAALRG SAFDPLGQSR GPAPPLEAKN EDSPEEKIRQ LEKKVNELVE 150
ESCIANSCGD LKLALEKAKD AGRKERVLVR QREQVTSPEN INLDLTYSVL 200
FNLASQYSAN EMYAEALNTY QVIVKNKMFS NAGRLKVNMG NIYLKQRNYS 250
KAIKFYRMAL DQIPSVHKEM RIKIMQNIGI TFIKTGQYSD AINSFEHIMS 300
MAPSLKAGFN LILSCFAIGD REKMKKAFQK LIAVPLEIDE DDKYISPSDD 350
PHTNLLIEAI KNDHLRQMER ERKAMAEKYI MTAAKLIAPV IEASFAVGYN 400
WCVEVVKASQ YVELANDLEI NKAITYLRQK DFNQAVDTLK MFEKKDSRVK 450
SAAATNLSFL YYLENEFAQA SSYADLAVSS DRYNPSALTN KGNTVFANGD 500
YEKAAEFYKE ALRNDSSCTE ALYNIGLTYK KLNRLDEALD SFLKLHAILR 550
NSAQVLCQIA NVYELMEDPN QAIEWLMQLI SVVPTDSQAL SKLGELYDSE 600
GDKSQAFQYY YESYRYFPSN IEVIEWLGAY YIDTQFCEKA IQYFERASLI 650
QPTQVKWQLM VASCFRRSGN YQKALDTYKE IHRKFPENVE CLRFLVRLCT 700
DIGLKEVQEY ATKLKRLEKM KEMREQRIKS GRDSGGGSRS KREGSAGSDS 750
GQNSSASSKS ERLSAKLRAL PGTDEPYESS GNKEIGKCLL CGSTGPSDRK 800
TKNCSQKENR RGRFC 815
Length:815
Mass (Da):91,885
Last modified:April 20, 2010 - v1
Checksum:i938EE721F5179A01
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06083433 Genomic DNA. No translation available.
AABR06083434 Genomic DNA. No translation available.
CH474049 Genomic DNA. Translation: EDM14349.1.
RefSeqiNP_001100736.1. NM_001107266.1.
UniGeneiRn.132110.

Genome annotation databases

EnsembliENSRNOT00000012988; ENSRNOP00000012988; ENSRNOG00000009278.
GeneIDi305918.
KEGGirno:305918.
UCSCiRGD:1309717. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06083433 Genomic DNA. No translation available.
AABR06083434 Genomic DNA. No translation available.
CH474049 Genomic DNA. Translation: EDM14349.1 .
RefSeqi NP_001100736.1. NM_001107266.1.
UniGenei Rn.132110.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000012988 ; ENSRNOP00000012988 ; ENSRNOG00000009278 .
GeneIDi 305918.
KEGGi rno:305918.
UCSCi RGD:1309717. rat.

Organism-specific databases

CTDi 8100.
RGDi 1309717. Ift88.

Phylogenomic databases

GeneTreei ENSGT00390000015473.
KOi K16474.
OMAi LILCYYA.
OrthoDBi EOG7N37D5.
TreeFami TF313218.

Miscellaneous databases

NextBioi 655246.

Family and domain databases

Gene3Di 1.25.40.10. 4 hits.
InterProi IPR013026. TPR-contain_dom.
IPR011990. TPR-like_helical.
IPR001440. TPR_1.
IPR019734. TPR_repeat.
[Graphical view ]
Pfami PF00515. TPR_1. 1 hit.
PF13174. TPR_6. 1 hit.
[Graphical view ]
SMARTi SM00028. TPR. 7 hits.
[Graphical view ]
PROSITEi PS50005. TPR. 10 hits.
PS50293. TPR_REGION. 2 hits.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4ACI9_RAT
AccessioniPrimary (citable) accession number: D4ACI9
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 38 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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