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D4ABK7

- D4ABK7_RAT

UniProt

D4ABK7 - D4ABK7_RAT

Protein
Submitted name:

Heterogeneous nuclear ribonucleoprotein H3 (2H9) (Predicted), isoform CRA_c

Gene

Hnrnph3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. nucleic acid binding Source: InterPro
    2. nucleotide binding Source: InterPro

    Keywords - Molecular functioni

    RibonucleoproteinImported

    Keywords - Ligandi

    Viral nucleoproteinImported

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Heterogeneous nuclear ribonucleoprotein H3 (2H9) (Predicted), isoform CRA_cImported
    Submitted name:
    Protein Hnrnph3Imported
    Submitted name:
    Protein LOC100910795Imported
    Gene namesi
    Name:Hnrnph3Imported
    Synonyms:Hnrph3_predictedImported, LOC100910795Imported
    ORF Names:rCG_60703Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 20

    Organism-specific databases

    RGDi1310019. Hnrnph3.

    Subcellular locationi

    GO - Cellular componenti

    1. ribonucleoprotein complex Source: UniProtKB-KW
    2. viral nucleocapsid Source: UniProtKB-KW

    Keywords - Cellular componenti

    Virion

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00620000087736.
    KOiK12898.
    OMAiPYDRPLG.
    OrthoDBiEOG7BS4BZ.
    TreeFamiTF316157.

    Family and domain databases

    Gene3Di3.30.70.330. 2 hits.
    InterProiIPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view]
    SMARTiSM00360. RRM. 2 hits.
    [Graphical view]
    PROSITEiPS50102. RRM. 2 hits.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4ABK7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MDWVMKHNGP NDASDGTVRL RGLPFGCSKE EIVQFFQGLE IVPNGITLTM    50
    DYQGRSTGEA FVQFASKEIA ENALGKHKER IGHRYIEIFR SSRSEIKGFY 100
    DPPRRLLGQR PGPYDRPIGG RGGYYGAGRG SMYDRMRRGG DGYDGGYGGF 150
    DDYGGYNNYG YGNDGFDDRM RDGRGMGGHG YGGAGDASSG FHGGHFVHMR 200
    GLPFRATEND IANFFSPLNP IRVHIDIGAD GRATGEADVE FVTHEDAVAA 250
    MSKDKNNMQH RYIELFLNST PGGGSGMGGS GMGGYGRDGM DNQGGYGSVG 300
    RMGMGNSYSG GYGAPDGLGG YGRGGGGSGG YYGQGGMSGG GWRGMY 346
    Length:346
    Mass (Da):36,869
    Last modified:April 20, 2010 - v1
    Checksum:i604F2E5947930E8E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06100872 Genomic DNA. No translation available.
    AABR06100873 Genomic DNA. No translation available.
    CH473988 Genomic DNA. Translation: EDL97365.1.
    RefSeqiNP_001102002.1. NM_001108532.1.
    XP_006256438.1. XM_006256376.1.
    XP_006256439.1. XM_006256377.1.
    XP_006256440.1. XM_006256378.1.
    XP_006256441.1. XM_006256379.1.
    UniGeneiRn.60652.

    Genome annotation databases

    EnsembliENSRNOT00000032600; ENSRNOP00000029804; ENSRNOG00000026849.
    ENSRNOT00000073617; ENSRNOP00000064570; ENSRNOG00000048193.
    GeneIDi361838.
    KEGGirno:361838.
    UCSCiRGD:1310019. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06100872 Genomic DNA. No translation available.
    AABR06100873 Genomic DNA. No translation available.
    CH473988 Genomic DNA. Translation: EDL97365.1 .
    RefSeqi NP_001102002.1. NM_001108532.1.
    XP_006256438.1. XM_006256376.1.
    XP_006256439.1. XM_006256377.1.
    XP_006256440.1. XM_006256378.1.
    XP_006256441.1. XM_006256379.1.
    UniGenei Rn.60652.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000032600 ; ENSRNOP00000029804 ; ENSRNOG00000026849 .
    ENSRNOT00000073617 ; ENSRNOP00000064570 ; ENSRNOG00000048193 .
    GeneIDi 361838.
    KEGGi rno:361838.
    UCSCi RGD:1310019. rat.

    Organism-specific databases

    CTDi 3189.
    RGDi 1310019. Hnrnph3.

    Phylogenomic databases

    GeneTreei ENSGT00620000087736.
    KOi K12898.
    OMAi PYDRPLG.
    OrthoDBi EOG7BS4BZ.
    TreeFami TF316157.

    Miscellaneous databases

    NextBioi 677788.

    Family and domain databases

    Gene3Di 3.30.70.330. 2 hits.
    InterProi IPR012677. Nucleotide-bd_a/b_plait.
    IPR000504. RRM_dom.
    [Graphical view ]
    SMARTi SM00360. RRM. 2 hits.
    [Graphical view ]
    PROSITEi PS50102. RRM. 2 hits.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.
    5. Ensembl
      Submitted (FEB-2013) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4ABK7_RAT
    AccessioniPrimary (citable) accession number: D4ABK7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3