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D4AB17 (D4AB17_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified May 1, 2013. Version 24. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Names and origin

Protein namesSubmitted name:
Protein LOC100912917 Ensembl ENSRNOP00000007087
Gene names
Name:Pfas Ensembl ENSRNOP00000007087 RGD 1304926
Synonyms:LOC100912917 Ensembl ENSRNOP00000007087
OrganismRattus norvegicus (Rat) [Reference proteome] Ensembl ENSRNOP00000007087
Taxonomic identifier10116 [NCBI]
Taxonomic lineageEukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Euarchontoglires › Glires › Rodentia › Sciurognathi › Muroidea › Muridae › Murinae › Rattus

Protein attributes

Sequence length1273 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000007087

Sequences

Sequence LengthMass (Da)Tools
D4AB17 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 74FA1E59482C1D6F

FASTA1,273137,053
        10         20         30         40         50         60 
MMLLGSPGWS LAPMICCWRW DPGTLNFSTP ASTNIVSVCQ AAGLRAVDRV ETTRRYRLSF 

        70         80         90        100        110        120 
AKQPTAEMEA ISLAALHDRM TEQHYPDPIQ SFSPQSIPAP LKDSINILAE GRPALEKANQ 

       130        140        150        160        170        180 
ELGLALDSWD LDFYTKRFQE LQRNPSTVEV FDLAQSNSEH SRHWFFKGQL HVDGKKLARS 

       190        200        210        220        230        240 
LFESIMSTQS SSNPNNVLKF CDNSSAIQGK EVRFLRPEDS TRPSCFRQQR GLRHVVFTAE 

       250        260        270        280        290        300 
THNFPTGVAP FSGATTGTGG RIRDVQCTGR GAHVVAGTAG YCFGNLHIPG YNLPWEDPSF 

       310        320        330        340        350        360 
QYPGNFARPL EVAIEASNGA SDYGNKFGEP VLAGFARSLG LQLPDGQRRE WIKPIMFSGG 

       370        380        390        400        410        420 
IGSMEAKHVG KEPPEPGMEV VKVGGPVYRI GVGGGAASSV QVQGDNTSDL DFGAVQRGDP 

       430        440        450        460        470        480 
EMEQKMNRVI RACVEAPGGN PICSLHDQGA GGNGNVLKEL SEPAGAVIYT SRFQLGDPTL 

       490        500        510        520        530        540 
NALEIWGAEY QESNALLLRP SDRDFLSRAS ARERCPACFV GTITGDKRIV LVDDRECLMG 

       550        560        570        580        590        600 
KSGQGDAPPT PPTPVDLDLD WVLGKMPQKE FFLQRKPPVL QPLALPPDLS VGQALERVLR 

       610        620        630        640        650        660 
LPAVASKRYL TNKVDRSVGG LVAQQQCVGP LQTPLADVAV VALSHQELVG AATALGEQPV 

       670        680        690        700        710        720 
KSLLDPKAAA RLAVSEALTN LVFALVTDLR DVKCSGNWMW AAKLPGEGAG LADACEAMVT 

       730        740        750        760        770        780 
VMAALGVAVD GGKDSLSMAA RVGTETVPAP GSLVISAYAV CPDITATVTP DLKHPGGKGH 

       790        800        810        820        830        840 
LLYVPLSPGQ HRLGGTALAQ CFSQLGEHPP DLDLPENLVR AFHITQGLLK GEWGPDRRLC 

       850        860        870        880        890        900 
SGHDVSDGGL VTCLLEMAFA GNCGIEVDVP APGIHALPVL FAEEPGLVLE VQEADVAGVL 

       910        920        930        940        950        960 
QRYQSAGLHC LELGHTGEAG PQAMVRVSVN GTVVVEEPVG QLRALWEETS FQLDLLQAEP 

       970        980        990       1000       1010       1020 
RCVTEEKQGL KERIGPSYCL PPTFPVASVP CKPGGPIPRV AILREEGSNG DREMADAFHL 

      1030       1040       1050       1060       1070       1080 
AGFEVWDVTM QDLCSGAVRL DTFRGVAFVG GFSYADVLGS AKGWAAAVTF NPQAREELGR 

      1090       1100       1110       1120       1130       1140 
FRRRPDTFSL GVCNGCQLLA LLGWVGSDPN EDQVEPDHDS QPAQPGLLLR HNLSGRFESR 

      1150       1160       1170       1180       1190       1200 
WATVRVEPGP ALMLRGMEGS VLPVWSAHGE GYMAFSSPEL QAKIKAKGLV PLHWADDDGN 

      1210       1220       1230       1240       1250       1260 
PTEQYPLNPN GSPGGIAGIC SPDGRHLALM PHPERAVRLW QWAWRPSPFD GLSTSPWLQL 

      1270 
FINARNWTQE DSC

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000007087.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000007087.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ		AABR06064370 Genomic DNA. No translation available.
IPIIPI00369646.

3D structure databases

ProteinModelPortalD4AB17.
ModBaseSearch...

Proteomic databases

PRIDED4AB17.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000007087; ENSRNOP00000007087; ENSRNOG00000005193.
UCSCRGD:1304926. rat.

Organism-specific databases

RGD6485156. LOC100912917.
1304926. Pfas.

Phylogenomic databases

GeneTreeENSGT00390000007600.
OrthoDBEOG4WDD9X.

Family and domain databases

InterProIPR010918. AIR_synth_C_dom.
IPR000728. AIR_synth_N_dom.
IPR017926. GATASE_1.
IPR010073. PRibForGlyAmidine_synth.
IPR016188. PurM_N-like.
[Graphical view]
PfamPF00586. AIRS. 1 hit.
PF02769. AIRS_C. 2 hits.
[Graphical view]
SUPFAMSSF56042. AIR_synth_C. 2 hits.
SSF55326. PurM_N-like. 2 hits.
TIGRFAMsTIGR01735. FGAM_synt. 1 hit.
PROSITEPS51273. GATASE_TYPE_1. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35573916.

Entry information

Entry nameD4AB17_RAT
AccessionPrimary (citable) accession number: D4AB17
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: May 1, 2013
This is version 24 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)
to top of pageNames·Attributes·General annotation·Ontologies·Sequences·References·Cross-refs·Entry info