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D4AAI2

- D4AAI2_RAT

UniProt

D4AAI2 - D4AAI2_RAT

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Protein
Submitted name:

Histocompatibility (Minor) HA-1 (Predicted), isoform CRA_b

Gene
Hmha1, Hmha1_predicted, rCG_29286
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. intracellular signal transduction Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-bindingSAAS annotations, ZincSAAS annotations

Names & Taxonomyi

Protein namesi
Submitted name:
Histocompatibility (Minor) HA-1 (Predicted), isoform CRA_bImported
Submitted name:
Protein Hmha1Imported
Gene namesi
Name:Hmha1Imported
Synonyms:Hmha1_predictedImported
ORF Names:rCG_29286Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 7

Organism-specific databases

RGDi1308662. Hmha1.

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00740000115398.
OMAiLMRPRPT.
OrthoDBiEOG7QNVK4.
TreeFamiTF351450.

Family and domain databases

Gene3Di1.10.555.10. 1 hit.
InterProiIPR001060. FCH_dom.
IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
IPR008936. Rho_GTPase_activation_prot.
IPR000198. RhoGAP_dom.
[Graphical view]
PfamiPF00620. RhoGAP. 1 hit.
[Graphical view]
SMARTiSM00109. C1. 1 hit.
SM00055. FCH. 1 hit.
SM00324. RhoGAP. 1 hit.
[Graphical view]
SUPFAMiSSF48350. SSF48350. 1 hit.
PROSITEiPS50238. RHOGAP. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4AAI2-1 [UniParc]FASTAAdd to Basket

« Hide

MFSRKKRELM KTPSISKKNR AGSPNPQSSS GELPRKDCTE TPSLEPPAMS     50
LSTVAKGTGT LKRPTSLSRH ASAAGFPLSG TATRTLGRGY RSPLSAASPA 100
ELPTEGPFPD GVEDISTLLA DVARFAEGLE KLKEFVLRDD LLEARRPLAH 150
ECLGEALRVM RQVISKYPLL NTVETLTAAG TLIAKVKAFH YECNNESDKR 200
EFEKALETIA VSFSCTVSEF LLGEVDSSTL LAVPPGDPSQ LVENLYGSGS 250
EGPPHSVEDC EEGCLPPEEV DMLLQRCEGG VDAALQYAKD MARYMKDLIG 300
YLEKRTTLEM EFAKGLQKVV HNCRQNVTHA PHMPLLSIYS LALEQDLEFG 350
HGMVQAVGTL QTQTFMQPLT LRRLEHERRR KEIKESWHRA QRKLQEAEAN 400
LRKAKQGYKQ RCEDHDKARL QVAKAEEEQQ GTGPGAGTAA SKALDKRRRL 450
EEEAKNKAEE AMATYRTCVA DAKTQKQELE DTKVTALRQI QEVIRQSDQT 500
IKSATISYYQ LMHMQTAPLP VNFQMLCESS KLYDPGQQYA SHVRQLQRGE 550
EPDVRYDFEP YVSTNAWSPI MRTRKGSFNP GDASGPEAAG SPPEEGGTSE 600
GAPNKDHRGG RGHQVHKSWP ISISDTEVSL DVSSGDLKKF DRTSSSGTMS 650
SNEELVDQEA GLVASAFDSA DLNGMDPELP VAMPSGPFRH VGLSKAARTH 700
RLRKLRTPAK CRECNSYVYF QGAECEECCL ACHKKCLETL AIQCGHKKLQ 750
GRLQLFGQDF SQAAHSTPDG VPFIIKKCVC EIERRALHTK GIYRVNGVKT 800
RVEKLCQAFE NGKELVELSQ ASPHDISNVL KLYLRQLPEP LISFRFYHEL 850
VGLAKDSLKA EAEAKAASRG RQDGSESEAA TLAMVGRLRE LMRDLPAENR 900
ATLLYLLRHL RRIVEMEQDN KMTPGNLGIV FGPTLLRPRP TDATVSLSSL 950
VDYPHQARVI ETLIVHYGLV FEEEPEEAAG SQEGASAQCA QLETAEGIVF 1000
PQQEEADDGN RESQVASNDS DSELEEASDL LSSSDASALH RLSFLEQTEA 1050
GLEEGPQSHS GSEEQLESED AAPGHQLCSF NTNQSNNTTQ ASLPTMRLRD 1100
GQITGGSGRK RQPQFV 1116
Length:1,116
Mass (Da):123,077
Last modified:April 20, 2010 - v1
Checksum:i8B1D750485D88901
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06047719 Genomic DNA. No translation available.
AABR06047720 Genomic DNA. No translation available.
AABR06047721 Genomic DNA. No translation available.
CH474029 Genomic DNA. Translation: EDL89354.1.
RefSeqiNP_001101537.1. NM_001108067.1.
UniGeneiRn.35286.

Genome annotation databases

EnsembliENSRNOT00000060648; ENSRNOP00000057381; ENSRNOG00000013220.
GeneIDi314618.
KEGGirno:314618.
UCSCiRGD:1308662. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06047719 Genomic DNA. No translation available.
AABR06047720 Genomic DNA. No translation available.
AABR06047721 Genomic DNA. No translation available.
CH474029 Genomic DNA. Translation: EDL89354.1 .
RefSeqi NP_001101537.1. NM_001108067.1.
UniGenei Rn.35286.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000060648 ; ENSRNOP00000057381 ; ENSRNOG00000013220 .
GeneIDi 314618.
KEGGi rno:314618.
UCSCi RGD:1308662. rat.

Organism-specific databases

CTDi 23526.
RGDi 1308662. Hmha1.

Phylogenomic databases

GeneTreei ENSGT00740000115398.
OMAi LMRPRPT.
OrthoDBi EOG7QNVK4.
TreeFami TF351450.

Miscellaneous databases

NextBioi 667925.
PROi D4AAI2.

Family and domain databases

Gene3Di 1.10.555.10. 1 hit.
InterProi IPR001060. FCH_dom.
IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
IPR008936. Rho_GTPase_activation_prot.
IPR000198. RhoGAP_dom.
[Graphical view ]
Pfami PF00620. RhoGAP. 1 hit.
[Graphical view ]
SMARTi SM00109. C1. 1 hit.
SM00055. FCH. 1 hit.
SM00324. RhoGAP. 1 hit.
[Graphical view ]
SUPFAMi SSF48350. SSF48350. 1 hit.
PROSITEi PS50238. RHOGAP. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4AAI2_RAT
AccessioniPrimary (citable) accession number: D4AAI2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 37 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

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