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D4AAI2

- D4AAI2_RAT

UniProt

D4AAI2 - D4AAI2_RAT

Protein
Submitted name:

Histocompatibility (Minor) HA-1 (Predicted), isoform CRA_b

Gene

Hmha1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 38 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    GO - Molecular functioni

    1. metal ion binding Source: UniProtKB-KW

    GO - Biological processi

    1. intracellular signal transduction Source: InterPro

    Keywords - Ligandi

    Metal-bindingSAAS annotation, ZincSAAS annotation

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Histocompatibility (Minor) HA-1 (Predicted), isoform CRA_bImported
    Submitted name:
    Protein Hmha1Imported
    Gene namesi
    Name:Hmha1Imported
    Synonyms:Hmha1_predictedImported
    ORF Names:rCG_29286Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 7

    Organism-specific databases

    RGDi1308662. Hmha1.

    Subcellular locationi

    GO - Cellular componenti

    1. intracellular Source: InterPro

    Family & Domainsi

    Phylogenomic databases

    GeneTreeiENSGT00740000115398.
    OMAiLMRPRPT.
    OrthoDBiEOG7QNVK4.
    TreeFamiTF351450.

    Family and domain databases

    Gene3Di1.10.555.10. 1 hit.
    InterProiIPR001060. FCH_dom.
    IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
    IPR008936. Rho_GTPase_activation_prot.
    IPR000198. RhoGAP_dom.
    [Graphical view]
    PfamiPF00620. RhoGAP. 1 hit.
    [Graphical view]
    SMARTiSM00109. C1. 1 hit.
    SM00055. FCH. 1 hit.
    SM00324. RhoGAP. 1 hit.
    [Graphical view]
    SUPFAMiSSF48350. SSF48350. 1 hit.
    PROSITEiPS50238. RHOGAP. 1 hit.
    PS00479. ZF_DAG_PE_1. 1 hit.
    PS50081. ZF_DAG_PE_2. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4AAI2-1 [UniParc]FASTAAdd to Basket

    « Hide

    MFSRKKRELM KTPSISKKNR AGSPNPQSSS GELPRKDCTE TPSLEPPAMS     50
    LSTVAKGTGT LKRPTSLSRH ASAAGFPLSG TATRTLGRGY RSPLSAASPA 100
    ELPTEGPFPD GVEDISTLLA DVARFAEGLE KLKEFVLRDD LLEARRPLAH 150
    ECLGEALRVM RQVISKYPLL NTVETLTAAG TLIAKVKAFH YECNNESDKR 200
    EFEKALETIA VSFSCTVSEF LLGEVDSSTL LAVPPGDPSQ LVENLYGSGS 250
    EGPPHSVEDC EEGCLPPEEV DMLLQRCEGG VDAALQYAKD MARYMKDLIG 300
    YLEKRTTLEM EFAKGLQKVV HNCRQNVTHA PHMPLLSIYS LALEQDLEFG 350
    HGMVQAVGTL QTQTFMQPLT LRRLEHERRR KEIKESWHRA QRKLQEAEAN 400
    LRKAKQGYKQ RCEDHDKARL QVAKAEEEQQ GTGPGAGTAA SKALDKRRRL 450
    EEEAKNKAEE AMATYRTCVA DAKTQKQELE DTKVTALRQI QEVIRQSDQT 500
    IKSATISYYQ LMHMQTAPLP VNFQMLCESS KLYDPGQQYA SHVRQLQRGE 550
    EPDVRYDFEP YVSTNAWSPI MRTRKGSFNP GDASGPEAAG SPPEEGGTSE 600
    GAPNKDHRGG RGHQVHKSWP ISISDTEVSL DVSSGDLKKF DRTSSSGTMS 650
    SNEELVDQEA GLVASAFDSA DLNGMDPELP VAMPSGPFRH VGLSKAARTH 700
    RLRKLRTPAK CRECNSYVYF QGAECEECCL ACHKKCLETL AIQCGHKKLQ 750
    GRLQLFGQDF SQAAHSTPDG VPFIIKKCVC EIERRALHTK GIYRVNGVKT 800
    RVEKLCQAFE NGKELVELSQ ASPHDISNVL KLYLRQLPEP LISFRFYHEL 850
    VGLAKDSLKA EAEAKAASRG RQDGSESEAA TLAMVGRLRE LMRDLPAENR 900
    ATLLYLLRHL RRIVEMEQDN KMTPGNLGIV FGPTLLRPRP TDATVSLSSL 950
    VDYPHQARVI ETLIVHYGLV FEEEPEEAAG SQEGASAQCA QLETAEGIVF 1000
    PQQEEADDGN RESQVASNDS DSELEEASDL LSSSDASALH RLSFLEQTEA 1050
    GLEEGPQSHS GSEEQLESED AAPGHQLCSF NTNQSNNTTQ ASLPTMRLRD 1100
    GQITGGSGRK RQPQFV 1116
    Length:1,116
    Mass (Da):123,077
    Last modified:April 20, 2010 - v1
    Checksum:i8B1D750485D88901
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06047719 Genomic DNA. No translation available.
    AABR06047720 Genomic DNA. No translation available.
    AABR06047721 Genomic DNA. No translation available.
    CH474029 Genomic DNA. Translation: EDL89354.1.
    RefSeqiNP_001101537.1. NM_001108067.1.
    UniGeneiRn.35286.

    Genome annotation databases

    EnsembliENSRNOT00000060648; ENSRNOP00000057381; ENSRNOG00000013220.
    GeneIDi314618.
    KEGGirno:314618.
    UCSCiRGD:1308662. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06047719 Genomic DNA. No translation available.
    AABR06047720 Genomic DNA. No translation available.
    AABR06047721 Genomic DNA. No translation available.
    CH474029 Genomic DNA. Translation: EDL89354.1 .
    RefSeqi NP_001101537.1. NM_001108067.1.
    UniGenei Rn.35286.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000060648 ; ENSRNOP00000057381 ; ENSRNOG00000013220 .
    GeneIDi 314618.
    KEGGi rno:314618.
    UCSCi RGD:1308662. rat.

    Organism-specific databases

    CTDi 23526.
    RGDi 1308662. Hmha1.

    Phylogenomic databases

    GeneTreei ENSGT00740000115398.
    OMAi LMRPRPT.
    OrthoDBi EOG7QNVK4.
    TreeFami TF351450.

    Miscellaneous databases

    NextBioi 667925.
    PROi D4AAI2.

    Family and domain databases

    Gene3Di 1.10.555.10. 1 hit.
    InterProi IPR001060. FCH_dom.
    IPR002219. Prot_Kinase_C-like_PE/DAG-bd.
    IPR008936. Rho_GTPase_activation_prot.
    IPR000198. RhoGAP_dom.
    [Graphical view ]
    Pfami PF00620. RhoGAP. 1 hit.
    [Graphical view ]
    SMARTi SM00109. C1. 1 hit.
    SM00055. FCH. 1 hit.
    SM00324. RhoGAP. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48350. SSF48350. 1 hit.
    PROSITEi PS50238. RHOGAP. 1 hit.
    PS00479. ZF_DAG_PE_1. 1 hit.
    PS50081. ZF_DAG_PE_2. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4AAI2_RAT
    AccessioniPrimary (citable) accession number: D4AAI2
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 38 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3