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D4AAI2

- D4AAI2_RAT

UniProt

D4AAI2 - D4AAI2_RAT

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Protein
Submitted name:

Histocompatibility (Minor) HA-1 (Predicted), isoform CRA_b

Gene

Hmha1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi

Functioni

GO - Molecular functioni

  1. metal ion binding Source: UniProtKB-KW

GO - Biological processi

  1. intracellular signal transduction Source: InterPro
Complete GO annotation...

Keywords - Ligandi

Metal-bindingSAAS annotation, ZincSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Histocompatibility (Minor) HA-1 (Predicted), isoform CRA_bImported
Submitted name:
Protein Hmha1Imported
Gene namesi
Name:Hmha1Imported
Synonyms:Hmha1_predictedImported
ORF Names:rCG_29286Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 7

Organism-specific databases

RGDi1308662. Hmha1.

Subcellular locationi

GO - Cellular componenti

  1. intracellular Source: InterPro
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00760000119098.
OMAiLMRPRPT.
OrthoDBiEOG7QNVK4.
TreeFamiTF351450.

Family and domain databases

Gene3Di1.10.555.10. 1 hit.
InterProiIPR001060. FCH_dom.
IPR002219. PE/DAG-bd.
IPR008936. Rho_GTPase_activation_prot.
IPR000198. RhoGAP_dom.
[Graphical view]
PfamiPF00620. RhoGAP. 1 hit.
[Graphical view]
SMARTiSM00109. C1. 1 hit.
SM00055. FCH. 1 hit.
SM00324. RhoGAP. 1 hit.
[Graphical view]
SUPFAMiSSF48350. SSF48350. 1 hit.
PROSITEiPS50238. RHOGAP. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4AAI2-1 [UniParc]FASTAAdd to Basket

« Hide

        10         20         30         40         50
MFSRKKRELM KTPSISKKNR AGSPNPQSSS GELPRKDCTE TPSLEPPAMS
60 70 80 90 100
LSTVAKGTGT LKRPTSLSRH ASAAGFPLSG TATRTLGRGY RSPLSAASPA
110 120 130 140 150
ELPTEGPFPD GVEDISTLLA DVARFAEGLE KLKEFVLRDD LLEARRPLAH
160 170 180 190 200
ECLGEALRVM RQVISKYPLL NTVETLTAAG TLIAKVKAFH YECNNESDKR
210 220 230 240 250
EFEKALETIA VSFSCTVSEF LLGEVDSSTL LAVPPGDPSQ LVENLYGSGS
260 270 280 290 300
EGPPHSVEDC EEGCLPPEEV DMLLQRCEGG VDAALQYAKD MARYMKDLIG
310 320 330 340 350
YLEKRTTLEM EFAKGLQKVV HNCRQNVTHA PHMPLLSIYS LALEQDLEFG
360 370 380 390 400
HGMVQAVGTL QTQTFMQPLT LRRLEHERRR KEIKESWHRA QRKLQEAEAN
410 420 430 440 450
LRKAKQGYKQ RCEDHDKARL QVAKAEEEQQ GTGPGAGTAA SKALDKRRRL
460 470 480 490 500
EEEAKNKAEE AMATYRTCVA DAKTQKQELE DTKVTALRQI QEVIRQSDQT
510 520 530 540 550
IKSATISYYQ LMHMQTAPLP VNFQMLCESS KLYDPGQQYA SHVRQLQRGE
560 570 580 590 600
EPDVRYDFEP YVSTNAWSPI MRTRKGSFNP GDASGPEAAG SPPEEGGTSE
610 620 630 640 650
GAPNKDHRGG RGHQVHKSWP ISISDTEVSL DVSSGDLKKF DRTSSSGTMS
660 670 680 690 700
SNEELVDQEA GLVASAFDSA DLNGMDPELP VAMPSGPFRH VGLSKAARTH
710 720 730 740 750
RLRKLRTPAK CRECNSYVYF QGAECEECCL ACHKKCLETL AIQCGHKKLQ
760 770 780 790 800
GRLQLFGQDF SQAAHSTPDG VPFIIKKCVC EIERRALHTK GIYRVNGVKT
810 820 830 840 850
RVEKLCQAFE NGKELVELSQ ASPHDISNVL KLYLRQLPEP LISFRFYHEL
860 870 880 890 900
VGLAKDSLKA EAEAKAASRG RQDGSESEAA TLAMVGRLRE LMRDLPAENR
910 920 930 940 950
ATLLYLLRHL RRIVEMEQDN KMTPGNLGIV FGPTLLRPRP TDATVSLSSL
960 970 980 990 1000
VDYPHQARVI ETLIVHYGLV FEEEPEEAAG SQEGASAQCA QLETAEGIVF
1010 1020 1030 1040 1050
PQQEEADDGN RESQVASNDS DSELEEASDL LSSSDASALH RLSFLEQTEA
1060 1070 1080 1090 1100
GLEEGPQSHS GSEEQLESED AAPGHQLCSF NTNQSNNTTQ ASLPTMRLRD
1110
GQITGGSGRK RQPQFV
Length:1,116
Mass (Da):123,077
Last modified:April 20, 2010 - v1
Checksum:i8B1D750485D88901
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06047719 Genomic DNA. No translation available.
AABR06047720 Genomic DNA. No translation available.
AABR06047721 Genomic DNA. No translation available.
CH474029 Genomic DNA. Translation: EDL89354.1.
RefSeqiNP_001101537.1. NM_001108067.1.
UniGeneiRn.35286.

Genome annotation databases

EnsembliENSRNOT00000060648; ENSRNOP00000057381; ENSRNOG00000013220.
GeneIDi314618.
KEGGirno:314618.
UCSCiRGD:1308662. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06047719 Genomic DNA. No translation available.
AABR06047720 Genomic DNA. No translation available.
AABR06047721 Genomic DNA. No translation available.
CH474029 Genomic DNA. Translation: EDL89354.1 .
RefSeqi NP_001101537.1. NM_001108067.1.
UniGenei Rn.35286.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000060648 ; ENSRNOP00000057381 ; ENSRNOG00000013220 .
GeneIDi 314618.
KEGGi rno:314618.
UCSCi RGD:1308662. rat.

Organism-specific databases

CTDi 23526.
RGDi 1308662. Hmha1.

Phylogenomic databases

GeneTreei ENSGT00760000119098.
OMAi LMRPRPT.
OrthoDBi EOG7QNVK4.
TreeFami TF351450.

Miscellaneous databases

NextBioi 667925.
PROi D4AAI2.

Family and domain databases

Gene3Di 1.10.555.10. 1 hit.
InterProi IPR001060. FCH_dom.
IPR002219. PE/DAG-bd.
IPR008936. Rho_GTPase_activation_prot.
IPR000198. RhoGAP_dom.
[Graphical view ]
Pfami PF00620. RhoGAP. 1 hit.
[Graphical view ]
SMARTi SM00109. C1. 1 hit.
SM00055. FCH. 1 hit.
SM00324. RhoGAP. 1 hit.
[Graphical view ]
SUPFAMi SSF48350. SSF48350. 1 hit.
PROSITEi PS50238. RHOGAP. 1 hit.
PS00479. ZF_DAG_PE_1. 1 hit.
PS50081. ZF_DAG_PE_2. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4AAI2_RAT
AccessioniPrimary (citable) accession number: D4AAI2
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: October 29, 2014
This is version 39 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3