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Protein
Submitted name:

Autophagy-related 16-like 2

Gene

Atg16l2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Autophagy-related 16-like 2Imported
Gene namesi
Name:Atg16l2Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 1

Organism-specific databases

RGDi1311400 Atg16l2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PaxDbiD4A9M7
PeptideAtlasiD4A9M7

PTM databases

iPTMnetiD4A9M7
PhosphoSitePlusiD4A9M7

Expressioni

Gene expression databases

BgeeiENSRNOG00000019413
GenevisibleiD4A9M7 RN

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026286

Structurei

3D structure databases

ProteinModelPortaliD4A9M7
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini336 – 623WD_REPEATS_REGIONInterPro annotationAdd BLAST288
Repeati336 – 377WDPROSITE-ProRule annotationAdd BLAST42
Repeati380 – 421WDPROSITE-ProRule annotationAdd BLAST42
Repeati422 – 463WDPROSITE-ProRule annotationAdd BLAST42
Repeati560 – 589WDPROSITE-ProRule annotationAdd BLAST30

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili122 – 225Sequence analysisAdd BLAST104

Keywords - Domaini

Coiled coilSequence analysis, WD repeatPROSITE-ProRule annotation

Phylogenomic databases

eggNOGiENOG410IMNZ Eukaryota
ENOG410YFNR LUCA
GeneTreeiENSGT00910000144058
InParanoidiD4A9M7
KOiK20868
OMAiQGPHCTA
OrthoDBiEOG091G0ML1
PhylomeDBiD4A9M7
TreeFamiTF315541

Family and domain databases

Gene3Di2.130.10.10, 2 hits
InterProiView protein in InterPro
IPR013923 Autophagy-rel_prot_16
IPR020472 G-protein_beta_WD-40_rep
IPR015943 WD40/YVTN_repeat-like_dom_sf
IPR001680 WD40_repeat
IPR019775 WD40_repeat_CS
IPR017986 WD40_repeat_dom
IPR036322 WD40_repeat_dom_sf
PfamiView protein in Pfam
PF08614 ATG16, 1 hit
PF00400 WD40, 4 hits
PRINTSiPR00320 GPROTEINBRPT
SMARTiView protein in SMART
SM00320 WD40, 7 hits
SUPFAMiSSF50978 SSF50978, 1 hit
PROSITEiView protein in PROSITE
PS00678 WD_REPEATS_1, 2 hits
PS50082 WD_REPEATS_2, 4 hits
PS50294 WD_REPEATS_REGION, 1 hit

Sequencei

Sequence statusi: Complete.

D4A9M7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGPSAPCDP CAPVAAWKRH ILRQLRHRDR TQKALFLELV PAYNHLLEKA
60 70 80 90 100
ELLAKFSEKL KSEPKDVIST PHQDSREEAS GTGPDQVSSP ASLKVKWQQE
110 120 130 140 150
KKGLQLVCGE MAYQVVRKSA ALNTLQSQLE ERQGRLEALQ ACVVQLQEAR
160 170 180 190 200
AQQSRQLEER QAENSAQREA YETLREQAAH QEAALRRLQE EARDLLEQLV
210 220 230 240 250
QRKARAAAER NLRNERRERA NQARVSQELK KAAKRTVSIS EIPNTLEDGT
260 270 280 290 300
KEETVALGPA AKPEFLESDS CEKWKRPYRS ASATSLTLSR CVDVVKGLLD
310 320 330 340 350
FKKRRGHSVG GVSEQRYQSI PVCVSAQIPS QAQDVLDAHL SEVNAVCFAP
360 370 380 390 400
NSSLLATGGA DRLIHLWNVV GGRLEANQTL EGAGGSITSV DFDPSGSQVL
410 420 430 440 450
AATYNQAAQL WKVGETQSKE TLSGHKDKVT AAKFKLTRHQ AVTGSRDRTV
460 470 480 490 500
KEWDLGRAYC SRTINVLSYC NDVVCGDHII ISGHNDQKIR FWDSRGPHCI
510 520 530 540 550
QVIPVQGRVT SLNLSHDQLH LLSCSRDNTL KVIDLRISNI RQVFRADGFK
560 570 580 590 600
CSSDWTKAVF SPDRSYALVG SSNGTLYIWD VNTGKLETSL QGPHCTAVNA
610 620
VAWCFSGNHV VSVDQVRKVV LWH
Length:623
Mass (Da):69,196
Last modified:April 20, 2010 - v1
Checksum:i4ACA4A698A809EFE
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC128828 Genomic DNA No translation available.
RefSeqiNP_001178489.1, NM_001191560.1
UniGeneiRn.104199

Genome annotation databases

EnsembliENSRNOT00000026286; ENSRNOP00000026286; ENSRNOG00000019413
GeneIDi308865
KEGGirno:308865
UCSCiRGD:1311400 rat

Similar proteinsi

Entry informationi

Entry nameiD4A9M7_RAT
AccessioniPrimary (citable) accession number: D4A9M7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 23, 2018
This is version 67 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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