Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Basket 0
(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

D4A9M7

- D4A9M7_RAT

UniProt

D4A9M7 - D4A9M7_RAT

Protein
Submitted name:

Protein Atg16l2

Gene

Atg16l2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
    • BLAST
    • Align
    • Format
    • Add to basket
    • History
      Entry version 39 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
    • Help video
    • Feedback
    • Comment

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Atg16l2Imported
    Gene namesi
    Name:Atg16l2Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 1

    Organism-specific databases

    RGDi1311400. Atg16l2.

    Structurei

    3D structure databases

    ProteinModelPortaliD4A9M7.
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Keywords - Domaini

    RepeatUniRule annotation, WD repeatUniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00740000115355.
    KOiK17890.
    OMAiKAAQLWK.
    OrthoDBiEOG70CR6M.
    PhylomeDBiD4A9M7.
    TreeFamiTF315541.

    Family and domain databases

    Gene3Di2.130.10.10. 1 hit.
    InterProiIPR013923. Autophagy-rel_prot_16.
    IPR020472. G-protein_beta_WD-40_rep.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view]
    PfamiPF08614. ATG16. 1 hit.
    PF00400. WD40. 4 hits.
    [Graphical view]
    PRINTSiPR00320. GPROTEINBRPT.
    SMARTiSM00320. WD40. 7 hits.
    [Graphical view]
    SUPFAMiSSF50978. SSF50978. 1 hit.
    PROSITEiPS00678. WD_REPEATS_1. 2 hits.
    PS50082. WD_REPEATS_2. 4 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A9M7-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGPSAPCDP CAPVAAWKRH ILRQLRHRDR TQKALFLELV PAYNHLLEKA    50
    ELLAKFSEKL KSEPKDVIST PHQDSREEAS GTGPDQVSSP ASLKVKWQQE 100
    KKGLQLVCGE MAYQVVRKSA ALNTLQSQLE ERQGRLEALQ ACVVQLQEAR 150
    AQQSRQLEER QAENSAQREA YETLREQAAH QEAALRRLQE EARDLLEQLV 200
    QRKARAAAER NLRNERRERA NQARVSQELK KAAKRTVSIS EIPNTLEDGT 250
    KEETVALGPA AKPEFLESDS CEKWKRPYRS ASATSLTLSR CVDVVKGLLD 300
    FKKRRGHSVG GVSEQRYQSI PVCVSAQIPS QAQDVLDAHL SEVNAVCFAP 350
    NSSLLATGGA DRLIHLWNVV GGRLEANQTL EGAGGSITSV DFDPSGSQVL 400
    AATYNQAAQL WKVGETQSKE TLSGHKDKVT AAKFKLTRHQ AVTGSRDRTV 450
    KEWDLGRAYC SRTINVLSYC NDVVCGDHII ISGHNDQKIR FWDSRGPHCI 500
    QVIPVQGRVT SLNLSHDQLH LLSCSRDNTL KVIDLRISNI RQVFRADGFK 550
    CSSDWTKAVF SPDRSYALVG SSNGTLYIWD VNTGKLETSL QGPHCTAVNA 600
    VAWCFSGNHV VSVDQVRKVV LWH 623
    Length:623
    Mass (Da):69,196
    Last modified:April 20, 2010 - v1
    Checksum:i4ACA4A698A809EFE
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06007566 Genomic DNA. No translation available.
    RefSeqiNP_001178489.1. NM_001191560.1.
    UniGeneiRn.104199.

    Genome annotation databases

    EnsembliENSRNOT00000026286; ENSRNOP00000026286; ENSRNOG00000019413.
    GeneIDi308865.
    KEGGirno:308865.
    UCSCiRGD:1311400. rat.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06007566 Genomic DNA. No translation available.
    RefSeqi NP_001178489.1. NM_001191560.1.
    UniGenei Rn.104199.

    3D structure databases

    ProteinModelPortali D4A9M7.
    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000026286 ; ENSRNOP00000026286 ; ENSRNOG00000019413 .
    GeneIDi 308865.
    KEGGi rno:308865.
    UCSCi RGD:1311400. rat.

    Organism-specific databases

    CTDi 89849.
    RGDi 1311400. Atg16l2.

    Phylogenomic databases

    GeneTreei ENSGT00740000115355.
    KOi K17890.
    OMAi KAAQLWK.
    OrthoDBi EOG70CR6M.
    PhylomeDBi D4A9M7.
    TreeFami TF315541.

    Miscellaneous databases

    NextBioi 659687.

    Family and domain databases

    Gene3Di 2.130.10.10. 1 hit.
    InterProi IPR013923. Autophagy-rel_prot_16.
    IPR020472. G-protein_beta_WD-40_rep.
    IPR015943. WD40/YVTN_repeat-like_dom.
    IPR001680. WD40_repeat.
    IPR019775. WD40_repeat_CS.
    IPR017986. WD40_repeat_dom.
    [Graphical view ]
    Pfami PF08614. ATG16. 1 hit.
    PF00400. WD40. 4 hits.
    [Graphical view ]
    PRINTSi PR00320. GPROTEINBRPT.
    SMARTi SM00320. WD40. 7 hits.
    [Graphical view ]
    SUPFAMi SSF50978. SSF50978. 1 hit.
    PROSITEi PS00678. WD_REPEATS_1. 2 hits.
    PS50082. WD_REPEATS_2. 4 hits.
    PS50294. WD_REPEATS_REGION. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A9M7_RAT
    AccessioniPrimary (citable) accession number: D4A9M7
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 39 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Caution

    The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3