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Protein
Submitted name:

SNW domain-containing 1

Gene

Snw1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-2173796 SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription
R-RNO-72163 mRNA Splicing - Major Pathway
R-RNO-8941856 RUNX3 regulates NOTCH signaling

Names & Taxonomyi

Protein namesi
Submitted name:
SNW domain-containing 1Imported
Submitted name:
Similar to Nuclear protein SkiP (Ski-interacting protein) (Predicted)Imported
Gene namesi
Name:Snw1Imported
Synonyms:RGD1561926_predictedImported
ORF Names:rCG_20602Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 6

Organism-specific databases

RGDi1561926 Snw1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

PeptideAtlasiD4A8G7

Expressioni

Gene expression databases

BgeeiENSRNOG00000037998

Interactioni

Binary interactionsi

WithEntry#Exp.IntActNotes
Atp1b4Q9R1932EBI-15644341,EBI-15644324

GO - Molecular functioni

Protein-protein interaction databases

DIPiDIP-60964N
IntActiD4A8G7, 1 interactor
STRINGi10116.ENSRNOP00000054619

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini175 – 335SKIP_SNWInterPro annotationAdd BLAST161

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili298 – 334Sequence analysisAdd BLAST37

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2441 Eukaryota
ENOG410XQGT LUCA
GeneTreeiENSGT00390000010423
KOiK06063
OMAiAPPYGQR
OrthoDBiEOG091G055X
TreeFamiTF300782

Family and domain databases

InterProiView protein in InterPro
IPR017862 SKI-int_prot_SKIP
IPR004015 SKI-int_prot_SKIP_SNW-dom
PANTHERiPTHR12096 PTHR12096, 1 hit
PfamiView protein in Pfam
PF02731 SKIP_SNW, 1 hit

Sequencei

Sequence statusi: Complete.

D4A8G7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTSFLPAP TQLSQDQLEA EERARSQRSR QTSLVSSRRE PPPYGYRKGW
60 70 80 90 100
IPRLLEDFGD GGAFPEIHVA QYPLDMGRKK KMSNALAIQV DPEGKIKYDA
110 120 130 140 150
IARQGQSKDK VIYSKYTDLV PKEVMNADDP DLQRPDEEAI KEITEKTRVA
160 170 180 190 200
LEKSVSQKVA AAMPVRAADK LAPAQYIRYT PSQQGVAFNS GAKQRVIRMV
210 220 230 240 250
EMQKDPMEPP RFKINKKIPR GPPSPPAPVM HSPSRKMTVK EQQEWKIPPC
260 270 280 290 300
ISNWKNAKGY TIPLDKRLAA DGRGLQTVHI NENFAKLAEA LYIADRKARE
310 320 330 340 350
AVEMRAQVER KMAQKEKEKH EEKLREMAQK ARERRAGIKT HVEKEDGEAR
360 370 380 390 400
ERDEIRHDRR KERQHDRNLS RAAPDKRSKL QRNENRDISE VIALGVPNPR
410 420 430 440 450
TSNEVQYDQR LFNQSKGMDS GFAGGEDEIY NVYDQAWRGG KDMAQSIYRP
460 470 480 490 500
SKNLDKDMYG DDLETRIKTN RFVPDKEFSG SDGRKRGREG PVQFEEDPFG
510 520 530
LDKFLEEAKQ HGGSKRPSDS SRPKEHEHEG KKRRKE
Length:536
Mass (Da):61,463
Last modified:April 20, 2010 - v1
Checksum:i668801CC6323E44D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07065139 Genomic DNA No translation available.
CH473982 Genomic DNA Translation: EDL81657.1
RefSeqiNP_001102749.1, NM_001109279.1
UniGeneiRn.220230

Genome annotation databases

EnsembliENSRNOT00000057807; ENSRNOP00000054619; ENSRNOG00000037998
GeneIDi500695
KEGGirno:500695
UCSCiRGD:1561926 rat

Similar proteinsi

Entry informationi

Entry nameiD4A8G7_RAT
AccessioniPrimary (citable) accession number: D4A8G7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: April 25, 2018
This is version 71 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported
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Main funding by: National Institutes of Health