Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein
Submitted name:

SNW domain-containing 1

Gene

Snw1

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 4 out of 5-Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-RNO-2122947. NOTCH1 Intracellular Domain Regulates Transcription.
R-RNO-2173796. SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription.
R-RNO-350054. Notch-HLH transcription pathway.
R-RNO-72163. mRNA Splicing - Major Pathway.

Names & Taxonomyi

Protein namesi
Submitted name:
SNW domain-containing 1Imported
Submitted name:
Similar to Nuclear protein SkiP (Ski-interacting protein) (Predicted)Imported
Gene namesi
Name:Snw1Imported
Synonyms:RGD1561926_predictedImported
ORF Names:rCG_20602Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 6

Organism-specific databases

RGDi1561926. Snw1.

Subcellular locationi

GO - Cellular componenti

  • catalytic step 2 spliceosome Source: GO_Central
  • chromatin Source: RGD
  • cyclin/CDK positive transcription elongation factor complex Source: Ensembl
  • cytoplasm Source: RGD
  • nuclear body Source: Ensembl
  • nuclear matrix Source: Ensembl
  • post-mRNA release spliceosomal complex Source: GO_Central
  • SMAD3-SMAD4 protein complex Source: Ensembl
  • SMAD protein complex Source: RGD

Expressioni

Gene expression databases

BgeeiENSRNOG00000037998.

Interactioni

Protein-protein interaction databases

DIPiDIP-60964N.
STRINGi10116.ENSRNOP00000054619.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini175 – 335SKIP_SNWInterPro annotationAdd BLAST161

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Coiled coili298 – 334Sequence analysisAdd BLAST37

Keywords - Domaini

Coiled coilSequence analysis

Phylogenomic databases

eggNOGiKOG2441. Eukaryota.
ENOG410XQGT. LUCA.
GeneTreeiENSGT00390000010423.
KOiK06063.
OMAiQLDPMEP.
OrthoDBiEOG091G055X.
TreeFamiTF300782.

Family and domain databases

InterProiView protein in InterPro
IPR017862. SKI-int_prot_SKIP.
IPR004015. SKI-int_prot_SKIP_SNW-dom.
PANTHERiPTHR12096. PTHR12096. 1 hit.
PfamiView protein in Pfam
PF02731. SKIP_SNW. 1 hit.

Sequencei

Sequence statusi: Complete.

D4A8G7-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MALTSFLPAP TQLSQDQLEA EERARSQRSR QTSLVSSRRE PPPYGYRKGW
60 70 80 90 100
IPRLLEDFGD GGAFPEIHVA QYPLDMGRKK KMSNALAIQV DPEGKIKYDA
110 120 130 140 150
IARQGQSKDK VIYSKYTDLV PKEVMNADDP DLQRPDEEAI KEITEKTRVA
160 170 180 190 200
LEKSVSQKVA AAMPVRAADK LAPAQYIRYT PSQQGVAFNS GAKQRVIRMV
210 220 230 240 250
EMQKDPMEPP RFKINKKIPR GPPSPPAPVM HSPSRKMTVK EQQEWKIPPC
260 270 280 290 300
ISNWKNAKGY TIPLDKRLAA DGRGLQTVHI NENFAKLAEA LYIADRKARE
310 320 330 340 350
AVEMRAQVER KMAQKEKEKH EEKLREMAQK ARERRAGIKT HVEKEDGEAR
360 370 380 390 400
ERDEIRHDRR KERQHDRNLS RAAPDKRSKL QRNENRDISE VIALGVPNPR
410 420 430 440 450
TSNEVQYDQR LFNQSKGMDS GFAGGEDEIY NVYDQAWRGG KDMAQSIYRP
460 470 480 490 500
SKNLDKDMYG DDLETRIKTN RFVPDKEFSG SDGRKRGREG PVQFEEDPFG
510 520 530
LDKFLEEAKQ HGGSKRPSDS SRPKEHEHEG KKRRKE
Length:536
Mass (Da):61,463
Last modified:April 20, 2010 - v1
Checksum:i668801CC6323E44D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07065139 Genomic DNA. No translation available.
CH473982 Genomic DNA. Translation: EDL81657.1.
RefSeqiNP_001102749.1. NM_001109279.1.
UniGeneiRn.220230.

Genome annotation databases

EnsembliENSRNOT00000057807; ENSRNOP00000054619; ENSRNOG00000037998.
GeneIDi500695.
KEGGirno:500695.
UCSCiRGD:1561926. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR07065139 Genomic DNA. No translation available.
CH473982 Genomic DNA. Translation: EDL81657.1.
RefSeqiNP_001102749.1. NM_001109279.1.
UniGeneiRn.220230.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-60964N.
STRINGi10116.ENSRNOP00000054619.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000057807; ENSRNOP00000054619; ENSRNOG00000037998.
GeneIDi500695.
KEGGirno:500695.
UCSCiRGD:1561926. rat.

Organism-specific databases

CTDi22938.
RGDi1561926. Snw1.

Phylogenomic databases

eggNOGiKOG2441. Eukaryota.
ENOG410XQGT. LUCA.
GeneTreeiENSGT00390000010423.
KOiK06063.
OMAiQLDPMEP.
OrthoDBiEOG091G055X.
TreeFamiTF300782.

Enzyme and pathway databases

ReactomeiR-RNO-2122947. NOTCH1 Intracellular Domain Regulates Transcription.
R-RNO-2173796. SMAD2/SMAD3:SMAD4 heterotrimer regulates transcription.
R-RNO-350054. Notch-HLH transcription pathway.
R-RNO-72163. mRNA Splicing - Major Pathway.

Gene expression databases

BgeeiENSRNOG00000037998.

Family and domain databases

InterProiView protein in InterPro
IPR017862. SKI-int_prot_SKIP.
IPR004015. SKI-int_prot_SKIP_SNW-dom.
PANTHERiPTHR12096. PTHR12096. 1 hit.
PfamiView protein in Pfam
PF02731. SKIP_SNW. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD4A8G7_RAT
AccessioniPrimary (citable) accession number: D4A8G7
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 15, 2017
This is version 62 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.