SubmitCancel

Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.

D4A8G7

- D4A8G7_RAT

UniProt

D4A8G7 - D4A8G7_RAT

(max 400 entries)x

Your basket is currently empty.

Select item(s) and click on "Add to basket" to create your own collection here
(400 entries max)

Protein
Submitted name: Protein Snw1
Gene
Snw1, RGD1561926_predicted, rCG_20602
Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 3 out of 5 - Protein predictedi

Functioni

GO - Molecular functioni

  1. protein binding Source: RGD
  2. transcription coactivator activity Source: Ensembl
  3. transcription corepressor activity Source: Ensembl

GO - Biological processi

  1. cellular response to retinoic acid Source: Ensembl
  2. intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator Source: Ensembl
  3. mRNA splicing, via spliceosome Source: InterPro
  4. negative regulation of transcription from RNA polymerase II promoter Source: Ensembl
  5. positive regulation by host of viral transcription Source: Ensembl
  6. positive regulation of histone H3-K4 methylation Source: Ensembl
  7. positive regulation of mRNA splicing, via spliceosome Source: Ensembl
  8. positive regulation of transcription from RNA polymerase II promoter Source: Ensembl
  9. positive regulation of transforming growth factor beta receptor signaling pathway Source: Ensembl
  10. positive regulation of vitamin D receptor signaling pathway Source: Ensembl
  11. regulation of retinoic acid receptor signaling pathway Source: Ensembl
  12. retinoic acid receptor signaling pathway Source: Ensembl
Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_198659. NOTCH1 Intracellular Domain Regulates Transcription.
REACT_198750. Constitutive Signaling by NOTCH1 PEST Domain Mutants.
REACT_198752. Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Snw1Imported
Submitted name:
Similar to Nuclear protein SkiP (Ski-interacting protein) (Predicted)Imported
Gene namesi
Name:Snw1Imported
Synonyms:RGD1561926_predictedImported
ORF Names:rCG_20602Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494: Chromosome 6

Organism-specific databases

RGDi1561926. Snw1.

Subcellular locationi

GO - Cellular componenti

  1. SMAD3-SMAD4 protein complex Source: Ensembl
  2. catalytic step 2 spliceosome Source: Ensembl
  3. chromatin Source: RGD
  4. nuclear matrix Source: Ensembl
  5. positive transcription elongation factor complex b Source: Ensembl
Complete GO annotation...

Family & Domainsi

Phylogenomic databases

GeneTreeiENSGT00390000010423.
KOiK06063.
OMAiAYNVYDK.
OrthoDBiEOG72JWFX.
TreeFamiTF300782.

Family and domain databases

InterProiIPR017862. SKI-int_prot_SKIP.
IPR004015. SKI-int_prot_SKIP_SNW-dom.
[Graphical view]
PANTHERiPTHR12096. PTHR12096. 1 hit.
PfamiPF02731. SKIP_SNW. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A8G7-1 [UniParc]FASTAAdd to Basket

« Hide

MALTSFLPAP TQLSQDQLEA EERARSQRSR QTSLVSSRRE PPPYGYRKGW    50
IPRLLEDFGD GGAFPEIHVA QYPLDMGRKK KMSNALAIQV DPEGKIKYDA 100
IARQGQSKDK VIYSKYTDLV PKEVMNADDP DLQRPDEEAI KEITEKTRVA 150
LEKSVSQKVA AAMPVRAADK LAPAQYIRYT PSQQGVAFNS GAKQRVIRMV 200
EMQKDPMEPP RFKINKKIPR GPPSPPAPVM HSPSRKMTVK EQQEWKIPPC 250
ISNWKNAKGY TIPLDKRLAA DGRGLQTVHI NENFAKLAEA LYIADRKARE 300
AVEMRAQVER KMAQKEKEKH EEKLREMAQK ARERRAGIKT HVEKEDGEAR 350
ERDEIRHDRR KERQHDRNLS RAAPDKRSKL QRNENRDISE VIALGVPNPR 400
TSNEVQYDQR LFNQSKGMDS GFAGGEDEIY NVYDQAWRGG KDMAQSIYRP 450
SKNLDKDMYG DDLETRIKTN RFVPDKEFSG SDGRKRGREG PVQFEEDPFG 500
LDKFLEEAKQ HGGSKRPSDS SRPKEHEHEG KKRRKE 536
Length:536
Mass (Da):61,463
Last modified:April 20, 2010 - v1
Checksum:i668801CC6323E44D
GO

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06045456 Genomic DNA. No translation available.
CH473982 Genomic DNA. Translation: EDL81657.1.
RefSeqiNP_001102749.1. NM_001109279.1.
UniGeneiRn.220230.

Genome annotation databases

EnsembliENSRNOT00000057807; ENSRNOP00000054619; ENSRNOG00000037998.
GeneIDi500695.
KEGGirno:500695.
UCSCiRGD:1561926. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBL
GenBank
DDBJ
Links Updated
AABR06045456 Genomic DNA. No translation available.
CH473982 Genomic DNA. Translation: EDL81657.1 .
RefSeqi NP_001102749.1. NM_001109279.1.
UniGenei Rn.220230.

3D structure databases

ModBasei Search...
MobiDBi Search...

Protocols and materials databases

Structural Biology Knowledgebase Search...

Genome annotation databases

Ensembli ENSRNOT00000057807 ; ENSRNOP00000054619 ; ENSRNOG00000037998 .
GeneIDi 500695.
KEGGi rno:500695.
UCSCi RGD:1561926. rat.

Organism-specific databases

CTDi 22938.
RGDi 1561926. Snw1.

Phylogenomic databases

GeneTreei ENSGT00390000010423.
KOi K06063.
OMAi AYNVYDK.
OrthoDBi EOG72JWFX.
TreeFami TF300782.

Enzyme and pathway databases

Reactomei REACT_198659. NOTCH1 Intracellular Domain Regulates Transcription.
REACT_198750. Constitutive Signaling by NOTCH1 PEST Domain Mutants.
REACT_198752. Constitutive Signaling by NOTCH1 HD+PEST Domain Mutants.

Miscellaneous databases

NextBioi 707018.

Family and domain databases

InterProi IPR017862. SKI-int_prot_SKIP.
IPR004015. SKI-int_prot_SKIP_SNW-dom.
[Graphical view ]
PANTHERi PTHR12096. PTHR12096. 1 hit.
Pfami PF02731. SKIP_SNW. 1 hit.
[Graphical view ]
ProtoNeti Search...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A8G7_RAT
AccessioniPrimary (citable) accession number: D4A8G7
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: September 3, 2014
This is version 36 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

External Data

Dasty 3

Similar proteinsi