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D4A8E5

- D4A8E5_RAT

UniProt

D4A8E5 - D4A8E5_RAT

Protein
Submitted name:

Protein Asb16

Gene

Asb16

Organism
Rattus norvegicus (Rat)
Status
Unreviewed - Annotation score: 1 out of 5- Protein predictedi
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    • History
      Entry version 36 (01 Oct 2014)
      Sequence version 1 (20 Apr 2010)
      Previous versions | rss
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    Functioni

    Pathwayi

    GO - Biological processi

    1. intracellular signal transduction Source: InterPro
    2. protein ubiquitination Source: UniProtKB-UniPathway

    Enzyme and pathway databases

    UniPathwayiUPA00143.

    Names & Taxonomyi

    Protein namesi
    Submitted name:
    Protein Asb16Imported
    Submitted name:
    Similar to ankyrin repeat domain-containing SOCS box protein Asb-16 (Predicted)Imported
    Gene namesi
    Name:Asb16Imported
    Synonyms:RGD1563878_predictedImported
    ORF Names:rCG_33341Imported
    OrganismiRattus norvegicus (Rat)Imported
    Taxonomic identifieri10116 [NCBI]
    Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
    ProteomesiUP000002494: Chromosome 10

    Organism-specific databases

    RGDi1563878. Asb16.

    Family & Domainsi

    Sequence similaritiesi

    Contains 7 ANK repeats.UniRule annotation
    Contains SOCS box domain.SAAS annotation

    Keywords - Domaini

    ANK repeatUniRule annotationSAAS annotation, RepeatUniRule annotation

    Phylogenomic databases

    GeneTreeiENSGT00390000011960.
    KOiK10338.
    OMAiLHNACAN.
    OrthoDBiEOG75B85F.
    TreeFamiTF333494.

    Family and domain databases

    Gene3Di1.25.40.20. 2 hits.
    InterProiIPR002110. Ankyrin_rpt.
    IPR020683. Ankyrin_rpt-contain_dom.
    IPR001496. SOCS_C.
    [Graphical view]
    PfamiPF12796. Ank_2. 1 hit.
    PF07525. SOCS_box. 1 hit.
    [Graphical view]
    SMARTiSM00248. ANK. 7 hits.
    SM00969. SOCS_box. 1 hit.
    [Graphical view]
    SUPFAMiSSF48403. SSF48403. 1 hit.
    PROSITEiPS50297. ANK_REP_REGION. 1 hit.
    PS50088. ANK_REPEAT. 4 hits.
    PS50225. SOCS. 1 hit.
    [Graphical view]

    Sequencei

    Sequence statusi: Complete.

    D4A8E5-1 [UniParc]FASTAAdd to Basket

    « Hide

    MAGESFPFTS STRRALRLQR EWLEWEDRRR AAAHQCRSHR YLPSPQARLI    50
    RPRRSCRDPA VHNALFSGDL QQVQILFQDE EAANMIVETV NNQLAWSAEQ 100
    GFWVLTPKTK QTAPLTITVA RGYTDCARHL ILKGAELDAR IGGRAALHEA 150
    CAQAHPDCVR LLLTFGAKAN VLSDEGMTPL HLCTAPESLQ CAKLLLEAGA 200
    SVNVASQESE VTPLHVAAAR GLEQHVALYL QNGADVALRT SQGETALNAA 250
    CAGAEGPGSS RQHEAAARQL LEAGADPQAA GRKRHTPLHN ACANGCGGLA 300
    ELLLRHGASP GVTNGAGHTP MDCALQAVQD APNWEPEVLF AALLDYGAEP 350
    VHPEMLKYCA NFPRAMEVLL NAYPCVPSCD TWVEAVLPEL WQEHEAFYSS 400
    ALSMENQPRR LQHLARLAVR AQLGSNCRQA ATQLPLPPLL RDYLLLCVEG 450
    RIQ 453
    Length:453
    Mass (Da):49,337
    Last modified:April 20, 2010 - v1
    Checksum:i00FBD79EAA294C2E
    GO

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06065620 Genomic DNA. No translation available.
    AABR06065621 Genomic DNA. No translation available.
    CH473948 Genomic DNA. Translation: EDM06181.1.
    RefSeqiNP_001102518.1. NM_001109048.1.
    UniGeneiRn.130803.

    Genome annotation databases

    EnsembliENSRNOT00000028388; ENSRNOP00000028388; ENSRNOG00000036794.
    GeneIDi498005.
    KEGGirno:498005.

    Cross-referencesi

    Sequence databases

    Select the link destinations:
    EMBL
    GenBank
    DDBJ
    Links Updated
    AABR06065620 Genomic DNA. No translation available.
    AABR06065621 Genomic DNA. No translation available.
    CH473948 Genomic DNA. Translation: EDM06181.1 .
    RefSeqi NP_001102518.1. NM_001109048.1.
    UniGenei Rn.130803.

    3D structure databases

    ModBasei Search...
    MobiDBi Search...

    Protocols and materials databases

    Structural Biology Knowledgebase Search...

    Genome annotation databases

    Ensembli ENSRNOT00000028388 ; ENSRNOP00000028388 ; ENSRNOG00000036794 .
    GeneIDi 498005.
    KEGGi rno:498005.

    Organism-specific databases

    CTDi 92591.
    RGDi 1563878. Asb16.

    Phylogenomic databases

    GeneTreei ENSGT00390000011960.
    KOi K10338.
    OMAi LHNACAN.
    OrthoDBi EOG75B85F.
    TreeFami TF333494.

    Enzyme and pathway databases

    UniPathwayi UPA00143 .

    Miscellaneous databases

    NextBioi 698380.
    PROi D4A8E5.

    Family and domain databases

    Gene3Di 1.25.40.20. 2 hits.
    InterProi IPR002110. Ankyrin_rpt.
    IPR020683. Ankyrin_rpt-contain_dom.
    IPR001496. SOCS_C.
    [Graphical view ]
    Pfami PF12796. Ank_2. 1 hit.
    PF07525. SOCS_box. 1 hit.
    [Graphical view ]
    SMARTi SM00248. ANK. 7 hits.
    SM00969. SOCS_box. 1 hit.
    [Graphical view ]
    SUPFAMi SSF48403. SSF48403. 1 hit.
    PROSITEi PS50297. ANK_REP_REGION. 1 hit.
    PS50088. ANK_REPEAT. 4 hits.
    PS50225. SOCS. 1 hit.
    [Graphical view ]
    ProtoNeti Search...

    Publicationsi

    1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
      Rat Genome Sequencing Project Consortium
      Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
      , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
      Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
      Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
      Strain: Brown NorwayImported.
    2. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    3. Cited for: NUCLEOTIDE SEQUENCE.
      Strain: BNImported.
    4. Ensembl
      Submitted (JUL-2011) to UniProtKB
      Cited for: IDENTIFICATION.
      Strain: Brown NorwayImported.

    Entry informationi

    Entry nameiD4A8E5_RAT
    AccessioniPrimary (citable) accession number: D4A8E5
    Entry historyi
    Integrated into UniProtKB/TrEMBL: April 20, 2010
    Last sequence update: April 20, 2010
    Last modified: October 1, 2014
    This is version 36 of the entry and version 1 of the sequence. [Complete history]
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Reference proteomeImported

    External Data

    Dasty 3