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Protein
Submitted name:

Protein Asb16

Gene

Asb16

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

Pathwayi

GO - Biological processi

Complete GO annotation...

Enzyme and pathway databases

ReactomeiREACT_312094. Antigen processing: Ubiquitination & Proteasome degradation.
UniPathwayiUPA00143.

Names & Taxonomyi

Protein namesi
Submitted name:
Protein Asb16Imported
Submitted name:
Similar to ankyrin repeat domain-containing SOCS box protein Asb-16 (Predicted)Imported
Gene namesi
Name:Asb16Imported
Synonyms:RGD1563878_predictedImported
ORF Names:rCG_33341Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
ProteomesiUP000002494 Componenti: Chromosome 10

Organism-specific databases

RGDi1563878. Asb16.

Structurei

3D structure databases

ProteinModelPortaliD4A8E5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Contains 7 ANK repeats.UniRule annotation
Contains SOCS box domain.SAAS annotation

Keywords - Domaini

ANK repeatUniRule annotationSAAS annotation, RepeatUniRule annotation

Phylogenomic databases

GeneTreeiENSGT00390000011960.
KOiK10338.
OMAiLHNACAN.
OrthoDBiEOG75B85F.
PhylomeDBiD4A8E5.
TreeFamiTF333494.

Family and domain databases

Gene3Di1.25.40.20. 2 hits.
InterProiIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR001496. SOCS_C.
[Graphical view]
PfamiPF12796. Ank_2. 1 hit.
PF07525. SOCS_box. 1 hit.
[Graphical view]
SMARTiSM00248. ANK. 7 hits.
SM00969. SOCS_box. 1 hit.
[Graphical view]
SUPFAMiSSF48403. SSF48403. 1 hit.
PROSITEiPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 4 hits.
PS50225. SOCS. 1 hit.
[Graphical view]

Sequencei

Sequence statusi: Complete.

D4A8E5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAGESFPFTS STRRALRLQR EWLEWEDRRR AAAHQCRSHR YLPSPQARLI
60 70 80 90 100
RPRRSCRDPA VHNALFSGDL QQVQILFQDE EAANMIVETV NNQLAWSAEQ
110 120 130 140 150
GFWVLTPKTK QTAPLTITVA RGYTDCARHL ILKGAELDAR IGGRAALHEA
160 170 180 190 200
CAQAHPDCVR LLLTFGAKAN VLSDEGMTPL HLCTAPESLQ CAKLLLEAGA
210 220 230 240 250
SVNVASQESE VTPLHVAAAR GLEQHVALYL QNGADVALRT SQGETALNAA
260 270 280 290 300
CAGAEGPGSS RQHEAAARQL LEAGADPQAA GRKRHTPLHN ACANGCGGLA
310 320 330 340 350
ELLLRHGASP GVTNGAGHTP MDCALQAVQD APNWEPEVLF AALLDYGAEP
360 370 380 390 400
VHPEMLKYCA NFPRAMEVLL NAYPCVPSCD TWVEAVLPEL WQEHEAFYSS
410 420 430 440 450
ALSMENQPRR LQHLARLAVR AQLGSNCRQA ATQLPLPPLL RDYLLLCVEG

RIQ
Length:453
Mass (Da):49,337
Last modified:April 20, 2010 - v1
Checksum:i00FBD79EAA294C2E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06065620 Genomic DNA. No translation available.
AABR06065621 Genomic DNA. No translation available.
CH473948 Genomic DNA. Translation: EDM06181.1.
RefSeqiNP_001102518.1. NM_001109048.1.
UniGeneiRn.130803.

Genome annotation databases

EnsembliENSRNOT00000028388; ENSRNOP00000028388; ENSRNOG00000036794.
GeneIDi498005.
KEGGirno:498005.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AABR06065620 Genomic DNA. No translation available.
AABR06065621 Genomic DNA. No translation available.
CH473948 Genomic DNA. Translation: EDM06181.1.
RefSeqiNP_001102518.1. NM_001109048.1.
UniGeneiRn.130803.

3D structure databases

ProteinModelPortaliD4A8E5.
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000028388; ENSRNOP00000028388; ENSRNOG00000036794.
GeneIDi498005.
KEGGirno:498005.

Organism-specific databases

CTDi92591.
RGDi1563878. Asb16.

Phylogenomic databases

GeneTreeiENSGT00390000011960.
KOiK10338.
OMAiLHNACAN.
OrthoDBiEOG75B85F.
PhylomeDBiD4A8E5.
TreeFamiTF333494.

Enzyme and pathway databases

UniPathwayiUPA00143.
ReactomeiREACT_312094. Antigen processing: Ubiquitination & Proteasome degradation.

Miscellaneous databases

NextBioi698380.
PROiD4A8E5.

Family and domain databases

Gene3Di1.25.40.20. 2 hits.
InterProiIPR002110. Ankyrin_rpt.
IPR020683. Ankyrin_rpt-contain_dom.
IPR001496. SOCS_C.
[Graphical view]
PfamiPF12796. Ank_2. 1 hit.
PF07525. SOCS_box. 1 hit.
[Graphical view]
SMARTiSM00248. ANK. 7 hits.
SM00969. SOCS_box. 1 hit.
[Graphical view]
SUPFAMiSSF48403. SSF48403. 1 hit.
PROSITEiPS50297. ANK_REP_REGION. 1 hit.
PS50088. ANK_REPEAT. 4 hits.
PS50225. SOCS. 1 hit.
[Graphical view]
ProtoNetiSearch...

Publicationsi

« Hide 'large scale' publications
  1. "Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
    Rat Genome Sequencing Project Consortium
    Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M.
    , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
    Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
    Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
    Strain: Brown NorwayImported.
  2. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  3. Cited for: NUCLEOTIDE SEQUENCE.
    Strain: BNImported.
  4. Ensembl
    Submitted (JUL-2011) to UniProtKB
    Cited for: IDENTIFICATION.
    Strain: Brown NorwayImported.

Entry informationi

Entry nameiD4A8E5_RAT
AccessioniPrimary (citable) accession number: D4A8E5
Entry historyi
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: May 27, 2015
This is version 44 of the entry and version 1 of the sequence. [Complete history]
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

External Data

Dasty 3

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into Uniref entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.