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D4A871 (D4A871_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified February 19, 2014. Version 23. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length569 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000042274

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
   Cellular_componentcytoskeleton

Inferred from electronic annotation. Source: InterPro

Complete GO annotation...

Sequences

Sequence LengthMass (Da)Tools
D4A871 [UniParc].

Last modified April 3, 2013. Version 2.
Checksum: 174BE5F41F652CE9

FASTA56965,080
        10         20         30         40         50         60 
MSEHSGNSDQ EDTLSEELDE DEILANLSPE ELKELQSEME VMAPDPHLPV GMIQKDQTDK 

        70         80         90        100        110        120 
APTGNFDHKS LVDYMYLQKA SRRMLEDERV PVSFVQSEEN TQKQHEVREK GIASMPQFLK 

       130        140        150        160        170        180 
EKLNSEILAK KRQSNGSNNV QETEDDEDEE DEEDEEDDED EDEGEEGDED EEDGDGEQAN 

       190        200        210        220        230        240 
RGKNEAKEQV HNNASICQQP ATRAMEEQKD TAETKGKGAK KIAKLDPKKL ALDTSFLKVS 

       250        260        270        280        290        300 
ARPSGNQTDL DGSLRRVRQN DPDMKELNLN NIENIPKEML LDFVNAMKKN KHIKSFSLAN 

       310        320        330        340        350        360 
VGADESVAFA LANMLRENRS ITTLNIESNF ITGKGIVAIM RCLQFNETLT ELRFHNQRHM 

       370        380        390        400        410        420 
LGHHAEMEIS RLLKANNTLL KMGYHFELPG PRMVVTNLLT RNQDKRRQKR QEEQQQQQLK 

       430        440        450        460        470        480 
EQRKLIAMLE NGLGLPPGMW ERLGGPMPDP RMQEFFQPSP GRSLAAQEVP FGARKEMIKN 

       490        500        510        520        530        540 
PPQPPQYKTD PDSFRVVKLK RIQRKSRMPE ARESQEKTNL KDVIKTLKPV PRNRPPPLVE 

       550        560 
ITPRDQLLND IRHSNVAYLK PVTLPNELF 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000042274.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000042274.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06032479 Genomic DNA. No translation available.

3D structure databases

ModBaseSearch...
MobiDBSearch...

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000047453; ENSRNOP00000042274; ENSRNOG00000032443.

Organism-specific databases

RGD1564924. Lmod3.

Phylogenomic databases

GeneTreeENSGT00740000115417.
OMAMYWQKAS.
OrthoDBEOG725DHJ.
TreeFamTF315841.

Family and domain databases

InterProIPR004934. Tropomodulin.
[Graphical view]
PANTHERPTHR10901. PTHR10901. 1 hit.
PfamPF03250. Tropomodulin. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio35573299.

Entry information

Entry nameD4A871_RAT
AccessionPrimary (citable) accession number: D4A871
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 3, 2013
Last modified: February 19, 2014
This is version 23 of the entry and version 2 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)