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D4A858 (D4A858_RAT) Unreviewed, UniProtKB/TrEMBL

Last modified July 9, 2014. Version 33. Feed History...

Clusters with 100%, 90%, 50% identity | Third-party data text xml rdf/xml gff fasta
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Protein attributes

Sequence length1129 AA.
Sequence statusComplete.
Protein existencePredicted

General annotation (Comments)

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data. Ensembl ENSRNOP00000042296

Ontologies

Keywords
   Technical termComplete proteome
Reference proteome
Gene Ontology (GO)
None. [Check GOA]

Sequences

Sequence LengthMass (Da)Tools
D4A858 [UniParc].

Last modified April 20, 2010. Version 1.
Checksum: 2046823CEA24DCA4

FASTA1,129122,243
        10         20         30         40         50         60 
MGNENSTSDH QRTSSVQSLR SLQPPGNSQT PQKQGDSPGS GAASIPGTND VIQSAAPEDL 

        70         80         90        100        110        120 
GHPPLADSSR YGVTVSSVST HLTVQSTSPS AAHASLAPVA SEHAALASAA AGPGVETPTA 

       130        140        150        160        170        180 
SCQHLAKNIN RSSDSEEAFE TPESTTPVKA PPAPPPPPPE VTPEPEVIEP PAPEEPGCIS 

       190        200        210        220        230        240 
EPVVVPDGPR SESVEGSPFR PSHSSSAVFD EDKPIASSGT YNLDFDSIEL VDNFQSLEPC 

       250        260        270        280        290        300 
SADYKGQECK VSTRRKSTES VPPSKTTLSR SLSLQASDFD GASCPGSPEA GTLATDACGT 

       310        320        330        340        350        360 
GSNSASSTLK RTKKTRPPSL KKKQATKKPT ETPPVKETQQ EPGEESPVPS EEHLAPETKT 

       370        380        390        400        410        420 
ESATPEGTGC TLSEETSLES AAVPTATCPL TLESVEDVSP LVSGGGRVQN SPPVGRKSVP 

       430        440        450        460        470        480 
LTTASEAVEV TLPDGGGQED LPAKGLSVRL EFDYSEDKGS WESQQENAPP TKKIGKKPVA 

       490        500        510        520        530        540 
KMPLRRPKLK KTPEKLDNTP ASPPRSPAEP SDIPIAKGTY TFDIDKWDDP NFNPFSSTSK 

       550        560        570        580        590        600 
MQESPTLSQQ SYNFDPDACE ESLDPFKASS KTPSSPSKSP ASFEIPASTI EADGDGLNKP 

       610        620        630        640        650        660 
AKKKKTPLKT DTFRVKKSPK RSPLSDPPSQ DPTPAATPEA PPVSTVVHAT DEEKLAVTSQ 

       670        680        690        700        710        720 
KWTCMTVDLD ADKQDFPQPS DLSNFVNETK FNSPSEELDY RNSYEIEYME KLGSSLPQDD 

       730        740        750        760        770        780 
DTPKKQALYL MFDTPQESPV KSPPVRMSDS PTPCSGSSFE DTEALVNATA KLQHPVPRGL 

       790        800        810        820        830        840 
ASNQEPLLQL PEKSSQKELE AMALGTPAEA IEITAPEGAF ASADALLSRL AHPASLCGAL 

       850        860        870        880        890        900 
GYLEPDLAEK NPPVFAQKLQ EELEFAVMRI EALKLARQIA LASRSRQDTK REATHPPDVS 

       910        920        930        940        950        960 
ISKTTLYSRI GPTEVEKPPG LLFQQPDLDS ALQVARAEVI AKEREVSEWR DKYEESRREV 

       970        980        990       1000       1010       1020 
VEMRKIVAEY EKTIAQMIED EQREKSISHQ TVQQLVLEKE QALADLNSVE KSLADLFRRY 

      1030       1040       1050       1060       1070       1080 
EKMKEVLEGF RKNEEVLKKC AQEYLSRVKK EEQRYQALKV HAEEKLDRAN AEIAQVRGKA 

      1090       1100       1110       1120 
QQEQAAYQAS LRKEQLRVDA LERTLEQKNK EIEELTKICD ELIAKMGKS 

« Hide

References

« Hide 'large scale' references
[1]"Genome sequence of the Brown Norway rat yields insights into mammalian evolution."
Rat Genome Sequencing Project Consortium
Gibbs R.A., Weinstock G.M., Metzker M.L., Muzny D.M., Sodergren E.J., Scherer S., Scott G., Steffen D., Worley K.C., Burch P.E., Okwuonu G., Hines S., Lewis L., Deramo C., Delgado O., Dugan-Rocha S., Miner G., Morgan M. expand/collapse author list , Hawes A., Gill R., Holt R.A., Adams M.D., Amanatides P.G., Baden-Tillson H., Barnstead M., Chin S., Evans C.A., Ferriera S., Fosler C., Glodek A., Gu Z., Jennings D., Kraft C.L., Nguyen T., Pfannkoch C.M., Sitter C., Sutton G.G., Venter J.C., Woodage T., Smith D., Lee H.-M., Gustafson E., Cahill P., Kana A., Doucette-Stamm L., Weinstock K., Fechtel K., Weiss R.B., Dunn D.M., Green E.D., Blakesley R.W., Bouffard G.G., De Jong P.J., Osoegawa K., Zhu B., Marra M., Schein J., Bosdet I., Fjell C., Jones S., Krzywinski M., Mathewson C., Siddiqui A., Wye N., McPherson J., Zhao S., Fraser C.M., Shetty J., Shatsman S., Geer K., Chen Y., Abramzon S., Nierman W.C., Havlak P.H., Chen R., Durbin K.J., Egan A., Ren Y., Song X.-Z., Li B., Liu Y., Qin X., Cawley S., Cooney A.J., D'Souza L.M., Martin K., Wu J.Q., Gonzalez-Garay M.L., Jackson A.R., Kalafus K.J., McLeod M.P., Milosavljevic A., Virk D., Volkov A., Wheeler D.A., Zhang Z., Bailey J.A., Eichler E.E., Tuzun E., Birney E., Mongin E., Ureta-Vidal A., Woodwark C., Zdobnov E., Bork P., Suyama M., Torrents D., Alexandersson M., Trask B.J., Young J.M., Huang H., Wang H., Xing H., Daniels S., Gietzen D., Schmidt J., Stevens K., Vitt U., Wingrove J., Camara F., Mar Alba M., Abril J.F., Guigo R., Smit A., Dubchak I., Rubin E.M., Couronne O., Poliakov A., Huebner N., Ganten D., Goesele C., Hummel O., Kreitler T., Lee Y.-A., Monti J., Schulz H., Zimdahl H., Himmelbauer H., Lehrach H., Jacob H.J., Bromberg S., Gullings-Handley J., Jensen-Seaman M.I., Kwitek A.E., Lazar J., Pasko D., Tonellato P.J., Twigger S., Ponting C.P., Duarte J.M., Rice S., Goodstadt L., Beatson S.A., Emes R.D., Winter E.E., Webber C., Brandt P., Nyakatura G., Adetobi M., Chiaromonte F., Elnitski L., Eswara P., Hardison R.C., Hou M., Kolbe D., Makova K., Miller W., Nekrutenko A., Riemer C., Schwartz S., Taylor J., Yang S., Zhang Y., Lindpaintner K., Andrews T.D., Caccamo M., Clamp M., Clarke L., Curwen V., Durbin R.M., Eyras E., Searle S.M., Cooper G.M., Batzoglou S., Brudno M., Sidow A., Stone E.A., Payseur B.A., Bourque G., Lopez-Otin C., Puente X.S., Chakrabarti K., Chatterji S., Dewey C., Pachter L., Bray N., Yap V.B., Caspi A., Tesler G., Pevzner P.A., Haussler D., Roskin K.M., Baertsch R., Clawson H., Furey T.S., Hinrichs A.S., Karolchik D., Kent W.J., Rosenbloom K.R., Trumbower H., Weirauch M., Cooper D.N., Stenson P.D., Ma B., Brent M., Arumugam M., Shteynberg D., Copley R.R., Taylor M.S., Riethman H., Mudunuri U., Peterson J., Guyer M., Felsenfeld A., Old S., Mockrin S., Collins F.S.
Nature 428:493-521(2004) [PubMed] [Europe PMC] [Abstract]
Cited for: NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
Strain: Brown Norway Ensembl ENSRNOP00000042296.
[2]Ensembl
Submitted (JUL-2011) to UniProtKB
Cited for: IDENTIFICATION.
Strain: Brown Norway Ensembl ENSRNOP00000042296.
+Additional computationally mapped references.

Cross-references

Sequence databases

EMBL
GenBank
DDBJ
AABR06008948 Genomic DNA. No translation available.
AABR06008949 Genomic DNA. No translation available.
AABR06008950 Genomic DNA. No translation available.
AABR06008951 Genomic DNA. No translation available.
AABR06008952 Genomic DNA. No translation available.
AABR06008953 Genomic DNA. No translation available.
RefSeqNP_001004418.1. NM_001004418.2.
UniGeneRn.13989.

3D structure databases

ProteinModelPortalD4A858.
ModBaseSearch...
MobiDBSearch...

Proteomic databases

PRIDED4A858.

Protocols and materials databases

StructuralBiologyKnowledgebaseSearch...

Genome annotation databases

EnsemblENSRNOT00000047161; ENSRNOP00000042296; ENSRNOG00000020457.
GeneID309025.
KEGGrno:309025.
UCSCRGD:1303004. rat.

Organism-specific databases

CTD10579.
RGD1303004. Tacc2.

Phylogenomic databases

GeneTreeENSGT00530000063855.
KOK14282.
PhylomeDBD4A858.

Family and domain databases

InterProIPR007707. TACC.
[Graphical view]
PANTHERPTHR13924. PTHR13924. 1 hit.
PfamPF05010. TACC. 1 hit.
[Graphical view]
ProtoNetSearch...

Other

NextBio660012.

Entry information

Entry nameD4A858_RAT
AccessionPrimary (citable) accession number: D4A858
Entry history
Integrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: July 9, 2014
This is version 33 of the entry and version 1 of the sequence. [Complete history]
Entry statusUnreviewed (UniProtKB/TrEMBL)