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Protein
Submitted name:

PDZ domain-containing 3

Gene

Pdzd3

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 1 out of 5-Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
PDZ domain-containing 3Imported
Gene namesi
Name:Pdzd3Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 8

Organism-specific databases

RGDi1559807. Pdzd3.

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Proteomic databases

PaxDbiD4A7C5.

Expressioni

Gene expression databases

BgeeiENSRNOG00000008526.
GenevisibleiD4A7C5. RN.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011582.

Structurei

3D structure databases

ProteinModelPortaliD4A7C5.
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini49 – 130PDZ (DHR)InterPro annotationAdd BLAST82
Domaini157 – 235PDZ (DHR)InterPro annotationAdd BLAST79
Domaini263 – 346PDZ (DHR)InterPro annotationAdd BLAST84
Domaini394 – 475PDZ (DHR)InterPro annotationAdd BLAST82

Phylogenomic databases

eggNOGiENOG410ITA7. Eukaryota.
ENOG410XURS. LUCA.
GeneTreeiENSGT00530000062999.
InParanoidiD4A7C5.
OMAiGVRPRLC.
OrthoDBiEOG091G0KAL.
PhylomeDBiD4A7C5.
TreeFamiTF350449.

Family and domain databases

Gene3Di2.30.42.10. 4 hits.
InterProiView protein in InterPro
IPR031200. NHERF-4.
IPR001478. PDZ.
PANTHERiPTHR14191:SF12. PTHR14191:SF12. 1 hit.
PfamiView protein in Pfam
PF00595. PDZ. 3 hits.
SMARTiView protein in SMART
SM00228. PDZ. 4 hits.
SUPFAMiSSF50156. SSF50156. 4 hits.
PROSITEiView protein in PROSITE
PS50106. PDZ. 4 hits.

Sequencei

Sequence statusi: Complete.

D4A7C5-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MEAAADLRDT ALLTLKFKFN PRLGIDNPVL SLAEDQDQSD PWNLHRPRFC
60 70 80 90 100
LLSKEEEKSF GFHLQQQLGK ADHVVCRVDP GSSAQRQGLR EGDRILAVNN
110 120 130 140 150
NIVEHEDYAV VVRYIRASGP RVLLTVLAQH VYDVTRAQQG NEAFPCPTLA
160 170 180 190 200
SGVRPRLCHV VKDEGGFGFS VTHGARGPFW LVLSAGGAAE RAGVPPGARL
210 220 230 240 250
LEVNGICVEK FTYNQLNRKL CQSGDRVTLL VAGPEVEEQC HQLGMPLAAP
260 270 280 290 300
LAEGWALPAK PRCLNIEKGP QGFGFLLREE KGPDGRLGQF LWEVDPGLPA
310 320 330 340 350
DKAGMKAGDR LVAVAGESMD GLGHEETVSR IRAQGSCVSL VVVDPEADRF
360 370 380 390 400
FSMVRLSPLL FLENTEIAAA PLAETKDLPV EDTVEPSGLA GSRQCFLYPG
410 420 430 440 450
PGGGYGFRLR CVASGPCLFI SQVTPGGSAA RAGLQMGDAI LEVNGCPVGG
460 470 480 490
DSDLDTLQQL AEAEPPLRLK LAPRNSQGSE AWISLESGED WPLASELL
Length:498
Mass (Da):53,594
Last modified:April 20, 2010 - v1
Checksum:i2AD4601EA4375356
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112557 Genomic DNA. No translation available.
RefSeqiNP_001178925.1. NM_001191996.1.
UniGeneiRn.54119.

Genome annotation databases

EnsembliENSRNOT00000011582; ENSRNOP00000011582; ENSRNOG00000008526.
GeneIDi500986.
KEGGirno:500986.
UCSCiRGD:1559807. rat.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC112557 Genomic DNA. No translation available.
RefSeqiNP_001178925.1. NM_001191996.1.
UniGeneiRn.54119.

3D structure databases

ProteinModelPortaliD4A7C5.
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000011582.

Proteomic databases

PaxDbiD4A7C5.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000011582; ENSRNOP00000011582; ENSRNOG00000008526.
GeneIDi500986.
KEGGirno:500986.
UCSCiRGD:1559807. rat.

Organism-specific databases

CTDi79849.
RGDi1559807. Pdzd3.

Phylogenomic databases

eggNOGiENOG410ITA7. Eukaryota.
ENOG410XURS. LUCA.
GeneTreeiENSGT00530000062999.
InParanoidiD4A7C5.
OMAiGVRPRLC.
OrthoDBiEOG091G0KAL.
PhylomeDBiD4A7C5.
TreeFamiTF350449.

Gene expression databases

BgeeiENSRNOG00000008526.
GenevisibleiD4A7C5. RN.

Family and domain databases

Gene3Di2.30.42.10. 4 hits.
InterProiView protein in InterPro
IPR031200. NHERF-4.
IPR001478. PDZ.
PANTHERiPTHR14191:SF12. PTHR14191:SF12. 1 hit.
PfamiView protein in Pfam
PF00595. PDZ. 3 hits.
SMARTiView protein in SMART
SM00228. PDZ. 4 hits.
SUPFAMiSSF50156. SSF50156. 4 hits.
PROSITEiView protein in PROSITE
PS50106. PDZ. 4 hits.
ProtoNetiSearch...

Entry informationi

Entry nameiD4A7C5_RAT
AccessioniPrimary (citable) accession number: D4A7C5
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 15, 2017
This is version 49 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Caution

The sequence shown here is derived from an Ensembl automatic analysis pipeline and should be considered as preliminary data.Imported

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.