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Protein
Submitted name:

Mitsugumin 29 (Predicted)

Gene

Sypl2

Organism
Rattus norvegicus (Rat)
Status
Unreviewed-Annotation score: Annotation score: 2 out of 5-Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Submitted name:
Mitsugumin 29 (Predicted)Imported
Submitted name:
Mitsugumin29Imported
Submitted name:
Synaptophysin-like 2Imported
Gene namesi
Name:Sypl2Imported
Synonyms:Mg29Imported, Mg29_predictedImported
ORF Names:rCG_29102Imported
OrganismiRattus norvegicus (Rat)Imported
Taxonomic identifieri10116 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaSciurognathiMuroideaMuridaeMurinaeRattus
Proteomesi
  • UP000002494 Componenti: Chromosome 2

Organism-specific databases

RGDi1309907. Sypl2.

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei117 – 139HelicalSequence analysisAdd BLAST23
Transmembranei151 – 171HelicalSequence analysisAdd BLAST21
Transmembranei214 – 234HelicalSequence analysisAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Membrane

Expressioni

Gene expression databases

BgeeiENSRNOG00000019780.

Interactioni

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026883.

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini30 – 238MARVELInterPro annotationAdd BLAST209

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysisSAAS annotation

Phylogenomic databases

eggNOGiENOG410IF8N. Eukaryota.
ENOG4111ZDM. LUCA.
GeneTreeiENSGT00390000010039.
OMAiWHGQGQD.
OrthoDBiEOG091G0ZEI.
TreeFamiTF315804.

Family and domain databases

InterProiView protein in InterPro
IPR008253. Marvel.
IPR001285. Synaptophysin/porin.
PANTHERiPTHR10306. PTHR10306. 1 hit.
PfamiView protein in Pfam
PF01284. MARVEL. 1 hit.
PRINTSiPR00220. SYNAPTOPHYSN.
PROSITEiView protein in PROSITE
PS51225. MARVEL. 1 hit.

Sequencei

Sequence statusi: Complete.

D4A6M0-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSSTESPGRT SDKSPRQQVD RLLLGLRWQR LEEPLGFIKV LQWLFAIFAF
60 70 80 90 100
GSCGSYSGET GALVRCNNDP KDVSSIIVLF GYPFRLYQVQ YEMPLCDEES
110 120 130 140 150
TSKTMNLMGD FSAPAEFFVT LGIFSFFYTM AALVIYLRFH KVYTENKRFP
160 170 180 190 200
LVDFCVTVSF TFFWLVAAAA WGKGLTDVKG ATRPSSLTAA MSVCHGEEAV
210 220 230 240 250
CSAGATPSMG LANISVLFGF INFFLWAGNC WFVFKETPWH GQGQDQGQGP
260
SQESAAEQGA VEKQ
Length:264
Mass (Da):29,280
Last modified:April 20, 2010 - v1
Checksum:i4D2665B21DB48604
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121208 Genomic DNA. No translation available.
AB158471 mRNA. Translation: BAM08465.1.
CH473952 Genomic DNA. Translation: EDL81925.1.
RefSeqiNP_001102033.1. NM_001108563.1.
UniGeneiRn.6456.

Genome annotation databases

EnsembliENSRNOT00000026883; ENSRNOP00000026883; ENSRNOG00000019780.
GeneIDi362018.
KEGGirno:362018.

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC121208 Genomic DNA. No translation available.
AB158471 mRNA. Translation: BAM08465.1.
CH473952 Genomic DNA. Translation: EDL81925.1.
RefSeqiNP_001102033.1. NM_001108563.1.
UniGeneiRn.6456.

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi10116.ENSRNOP00000026883.

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSRNOT00000026883; ENSRNOP00000026883; ENSRNOG00000019780.
GeneIDi362018.
KEGGirno:362018.

Organism-specific databases

CTDi284612.
RGDi1309907. Sypl2.

Phylogenomic databases

eggNOGiENOG410IF8N. Eukaryota.
ENOG4111ZDM. LUCA.
GeneTreeiENSGT00390000010039.
OMAiWHGQGQD.
OrthoDBiEOG091G0ZEI.
TreeFamiTF315804.

Gene expression databases

BgeeiENSRNOG00000019780.

Family and domain databases

InterProiView protein in InterPro
IPR008253. Marvel.
IPR001285. Synaptophysin/porin.
PANTHERiPTHR10306. PTHR10306. 1 hit.
PfamiView protein in Pfam
PF01284. MARVEL. 1 hit.
PRINTSiPR00220. SYNAPTOPHYSN.
PROSITEiView protein in PROSITE
PS51225. MARVEL. 1 hit.
ProtoNetiSearch...

Entry informationi

Entry nameiD4A6M0_RAT
AccessioniPrimary (citable) accession number: D4A6M0
Entry historyiIntegrated into UniProtKB/TrEMBL: April 20, 2010
Last sequence update: April 20, 2010
Last modified: March 15, 2017
This is version 54 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

Similar proteinsi

Links to similar proteins from the UniProt Reference Clusters (UniRef) at 100%, 90% and 50% sequence identity:
100%UniRef100 combines identical sequences and sub-fragments with 11 or more residues from any organism into one UniRef entry.
90%UniRef90 is built by clustering UniRef100 sequences that have at least 90% sequence identity to, and 80% overlap with, the longest sequence (a.k.a seed sequence).
50%UniRef50 is built by clustering UniRef90 seed sequences that have at least 50% sequence identity to, and 80% overlap with, the longest sequence in the cluster.